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Updated: Aug 8, 2026

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
Published on: June 21, 2016
Heterodimeric retinoic acid receptor-beta and retinoid X receptor-alpha complexes stimulate expression of the
Insights
Retinoic acid regulates intercellular adhesion molecule-1 (ICAM-1) gene expression via a specific DNA region. This regulation depends on retinoic acid receptor beta and retinoid X receptor alpha in Cos-1 cells.
Area of Science:
- Molecular Biology
- Immunology
- Gene Regulation
Background:
- Intercellular adhesion molecule-1 (ICAM-1) is crucial for immune responses.
- ICAM-1 expression is modulated by inflammatory signals and retinoic acid.
- Understanding ICAM-1 transcriptional control by retinoic acid is important.
Purpose of the Study:
- To elucidate the mechanisms of retinoic acid-induced ICAM-1 gene expression.
- To identify the specific DNA elements and receptors involved in ICAM-1 regulation.
Main Methods:
- Deletion mutant analysis of the ICAM-1 promoter.
- Reporter gene assays (luciferase) in Cos-1 cells.
- Electrophoretic mobility shift assays (EMSAs).
Main Results:
- A critical retinoic acid-responsive element (RARE) was identified between -393 and -176 bp of the ICAM-1 gene.
- This RARE conferred retinoic acid responsiveness to a reporter construct.
- ICAM-1 gene regulation by retinoic acid was dependent on retinoic acid receptor beta (RARβ) and retinoid X receptor alpha (RXRα).
- EMSAs confirmed binding of RARβ and RXRα to the ICAM-1 RARE, showing competitive binding with another known RARE.
Conclusions:
- Retinoic acid stimulates ICAM-1 gene expression through a specific RARE.
- The RARβ/RXRα heterodimer mediates this transcriptional regulation.
- These findings provide insight into the molecular mechanisms controlling ICAM-1 expression in response to retinoic acid.
Abstract:
Human intercellular adhesion molecule-1 (ICAM-1), a specific ligand for the leukocyte-function associated antigen-1 and for Mac-1, plays an important role in immune responses. ICAM-1 expression is regulated by various proinflammatory cytokines, phorbol myristate acetate, and retinoic acid. In this study, we investigated the mechanisms of transcriptional control involved in the stimulation of ICAM-1 gene expression by retinoic acid in Cos-1 cells. Deletion mutant analysis provided evidence that a region located between -393 and -176 from the translational start site is critical to retinoic acid stimulation of luciferase activity. This region harbors the consensus sequence for a retinoic acid-responsive element (RARE) 5'-GGGTCATCGCCCTGCCA-3'. The Smal(-270)/Smal (-178) fragment containing this element conferred appropriate retinoic acid responsiveness to an enhancerless SV40 promoter. Cotransfection of expression vectors encoding the retinoic acid receptor alpha, beta, or gamma and retinoid X receptor alpha with reporter plasmids harboring the putative RARE demonstrated that the ICAM-1 gene is regulated by retinoic acid in a retinoic acid receptor beta/retinoid X receptor alpha-dependent fashion. Electrophoretic mobility shift assays showed that ICAM-1 and ADH3 RARE, a well-characterized RARE, display the same band shift pattern, bind retinoic acid receptor beta and retinoid X receptor alpha, and are mutually competitive.
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