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A Guide to Production, Crystallization, and Structure Determination of Human IKK1/α
Published on: November 2, 2018
Crystal structure of interleukin-10 reveals the functional dimer with an unexpected topological similarity to
A Zdanov1, C Schalk-Hihi, A Gustchina
1Macromolecular Structure Laboratory, NCI-Frederick Cancer Research and Development Center, Maryland 21702, USA.
Insights
The crystal structure of Interleukin (IL)-10 reveals a tight V-shaped dimer, offering insights into its biological activity and receptor interactions. This finding is crucial for understanding cytokine function and developing new therapeutics.
Area of Science:
- Structural Biology
- Immunology
- Protein Crystallography
Background:
- Interleukin (IL)-10 is a cytokine that suppresses the production of other regulatory factors like interferon gamma (IFN-gamma) and IL-2.
- The dimeric form of IL-10 in solution is thought to be involved in receptor binding, but its precise nature remained uncharacterized.
- Understanding the atomic structure of IL-10 is essential for interpreting its biological functions and designing targeted therapeutic agents.
Purpose of the Study:
- To determine the atomic structure of recombinant human IL-10.
- To elucidate the structural basis of IL-10 dimerization.
- To provide a foundation for understanding IL-10's biological activity and receptor interactions.
Main Methods:
- X-ray crystallography was employed to solve the structure of recombinant human IL-10.
- High-resolution data collection (1.8 Å) and crystallographic refinement were performed.
- Structural analysis focused on the dimeric interface and helical bundle organization.
Main Results:
- The X-ray crystal structure of human IL-10 was determined at 1.8 Å resolution.
- IL-10 forms a tight dimer with a V-shaped conformation, comprising two interpenetrating subunits.
- The structure features a bundle of six alpha-helices, with four from one subunit and two from the other, resembling other helical cytokines but with unique topological features.
Conclusions:
- The determined structure of IL-10 reveals a topological similarity to IFN-gamma, suggesting a potential link between their biological effects.
- The atomic model provides insights into potential mechanisms of dimer-to-monomer conversion and identifies putative receptor interaction sites.
- The high-resolution structure demonstrates that internal disorder is not a universal characteristic of helical cytokines.
Background:
Interleukin (IL)-10 is a cytokine that inhibits production of other regulatory factors, including interferon gamma (IFN-gamma) and IL-2. A dimer of IL-10 is present in solution and is presumed to participate in receptor binding, but the nature of the dimer has not been previously reported. An atomic model is necessary to interpret biological activity of IL-10 and to design mutants with agonistic or antagonistic properties.
Results:
The X-ray crystal structure of a recombinant form of human IL-10 has been solved at 1.8 A resolution and refined to a crystallographic R-factor of 0.156. The molecule is a tight dimer made of two interpenetrating subunits, forming a V-shaped structure. Each half of the structure consists of a six alpha-helices, four originating from one subunit and two from the other. Four of the helices form a classical 'up-up-down-down' bundle observed in all other helical cytokines. The overall topology of the helices bears close resemblance to IFN gamma, although the similarity is less striking when examined in greater detail.
Conclusions:
The topological similarity of IL-10 to IFN gamma was totally unexpected, and may be a reflection of the close relationship between the biological effects of these two cytokines. The structure of IL-10 provides insights into the possible modes of conversion of the dimer into monomers, and of putative sites of receptor interactions. The good level of refinement and high resolution of this structure show that the internal disorder often associated with other helical cytokines is not an essential feature of this class of proteins.
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