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A High Resolution Method to Monitor Phosphorylation-dependent Activation of IRF3
Published on: January 24, 2016
Diverse effects of BCL3 phosphorylation on its modulation of NF-kappaB p52 homodimer binding to DNA
1Departments of Pathology and of Radiation and Cellular Oncology, University of Chicago, Chicago, Illinois 60637, USA.
Insights
BCL3 protein
Area of Science:
- Molecular Biology
- Cellular Biology
- Biochemistry
Background:
- Nuclear factor-kappa B (NF-kappaB) transcription factors regulate gene expression.
- IkappaB proteins modulate NF-kappaB activity and localization.
- BCL3 is a unique nuclear IkappaB protein with complex regulatory functions.
Purpose of the Study:
- To investigate the role of BCL3 in regulating NF-kappaB p52 homodimer DNA binding.
- To determine how BCL3 phosphorylation and concentration affect its interaction with p52.
- To elucidate the mechanisms by which BCL3 modulates NF-kappaB-dependent transcription.
Main Methods:
- Gel shift analysis to assess DNA-binding activity.
- Tagged protein and tagged DNA coprecipitation to study complex formation.
- Analysis of BCL3 phosphoforms and their interactions with p52 homodimers.
Main Results:
- BCL3 forms a kappaB-binding complex with p52 homodimers at intermediate ratios, dependent on BCL3 phosphorylation.
- At low BCL3/p52 ratios, BCL3 enhances p52 homodimer binding to nonconsensus DNA sites.
- At high BCL3/p52 ratios, BCL3 forms an inhibitory complex with p52 homodimers.
Conclusions:
- BCL3's function in regulating NF-kappaB p52 homodimer binding is concentration-dependent.
- BCL3 phosphorylation is critical for its ability to modulate p52 complex formation and DNA binding.
- These findings suggest that BCL3 phosphorylation influences NF-kappaB-dependent transcription in vivo.
Abstract:
IkappaB proteins control the subcellular localization and DNA binding activity of NF-kappaB transcription factors. BCL3 is a nuclear IkappaB that can inhibit or enhance the binding of NF-kappaB p50 or p52 homodimers to consensus DNA-binding (kappaB) sequences or form a kappaB-binding complex with homodimers. To study BCL3 function, we have used gel shift analysis and tagged protein and tagged DNA coprecipitation analyses. Our results show that at intermediate ratios of BCL3 to p52 all observed phosphoforms of BCL3 are able to form a kappaB-binding complex with p52 homodimers. At low BCL3/p52 ratios, BCL3 increases the rate of p52 homodimer binding to kappaB sites in the presence of nonconsensus DNA and dissociates from the complex. At high BCL3/p52 ratios, BCL3 forms a higher order inhibitory complex with p52 homodimers. All of these effects depend on BCL3 phosphorylation and relative concentration. These results indicate that BCL3 phosphorylation may affect its regulation of NF-kappaB-dependent transcription in vivo.
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