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Assessment of Immunologically Relevant Dynamic Tertiary Structural Features of the HIV-1 V3 Loop Crown R2 Sequence by ab initio Folding
Published on: September 15, 2010
Specific interaction of conformational polypeptides derived from HIV gp120 with human T lymphocyte CD4 receptor
1Oral and Pharyngeal Cancer Branch, National Institute of Dental Research, National Institutes of Health, Bethesda, MD 20892, USA.
Insights
HIV C4 peptomers, derived from human immunodeficiency virus (HIV) glycoproteins, bind to the CD4 receptor. This interaction, dependent on peptomer structure, is crucial for understanding HIV entry and developing vaccines.
Area of Science:
- Virology
- Immunology
- Biochemistry
Background:
- The C4 domain of human immunodeficiency virus (HIV) glycoprotein 120 (gp120) is critical for binding to the CD4 receptor, initiating viral entry.
- Understanding the molecular basis of this interaction is key to developing effective HIV therapeutics and vaccines.
Purpose of the Study:
- To investigate whether cross-linked peptides (peptomers) derived from HIV C4 domains can mimic the gp120 protein's interaction with the CD4 receptor.
- To identify the specific components and structural features of C4 peptomers responsible for CD4 binding.
Main Methods:
- Preparation of cross-linked peptomers from HIV-1 and HIV-2 C4 domain sequences.
- Utilized a novel protein-binding assay to assess the interaction between C4 peptomers and recombinant soluble CD4 protein.
- Tested control peptomers (Poly V3 MN, Poly NINA) and monomeric peptides for CD4 binding to ensure specificity.
Main Results:
- All polymeric components of HIV-1 C4 peptomers demonstrated binding to soluble CD4 protein.
- HIV-2 C4 peptomers showed CD4 binding only in constituents larger than trimers.
- CD4 binding was specific to HIV C4 peptomers, with no binding observed for control peptomers or monomeric peptides.
- Higher alpha-helical content in peptomers correlated with successful CD4 binding compared to monomeric peptides.
Conclusions:
- The secondary structure, specifically alpha-helical conformation, is a critical determinant for CD4 binding by HIV C4 peptomers.
- These findings provide a more defined molecular understanding of the gp120-CD4 interaction.
- The results have implications for designing novel HIV vaccines and therapeutics targeting the initial viral attachment step.
Abstract:
Specifically cross-linked peptides (peptomers) have been prepared from the repeating sequences of the C4 domains of glycoproteins 120 present in different isolates of human immunodeficiency virus (HIV). In order to investigate if the HIV C4 peptomers could function as gp120 protein, we have used a novel protein-binding assay to examine if and which components of the peptomers could interact with CD4 receptor in vitro. Here, we demonstrate that all the polymeric components of the HIV-1 C4 peptomer could bind to recombinant soluble CD4 protein. A similar result was also obtained with HIV-2 C4 peptomer except that the binding occured only in those of constituents having molecular weights higher than that of trimer. Remarkably, the CD4-binding was demonstrated to be specific to the HIV C4 peptomers as it did not occur with control peptomers such as Poly V3 MN and Poly NINA whose peptide sequences bore no homology to those of the HIV C4 peptomers. Furthermore, consistent with previous findings, no interaction of HIV-1 C4 monomeric peptide (419-436) with CD4 was detected under the same conditions. Since it is known that the HIV C4 peptomers have much higher contents of alpha-helical conformation than those of their monomeric peptides, we conclude that the secondary structure is a pivotal determinant for the successful CD4-binding by the peptomers. Our finding reveals a more defined molecular nature of the gp120-CD4 interaction and may be important for designing HIV vaccines and therapeutics which target the first step in the virus infection.
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