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Updated: Aug 10, 2026

Induction and Assessment of Class Switch Recombination in Purified Murine B Cells
Published on: August 14, 2010
Class switching in B cells lacking 3' immunoglobulin heavy chain enhancers
J P Manis1, N van der Stoep, M Tian
1The Howard Hughes Medical Institute, Boston, Massachusetts 02115, USA.
Insights
Investigating immunoglobulin heavy chain class switch recombination (CSR), this study found that specific 3' enhancers are crucial for the process. Disabling these enhancers severely impaired CSR, highlighting their regulatory role.
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- The 40-kb region downstream of the immunoglobulin (Ig) heavy chain Calpha gene contains transcriptional enhancers potentially involved in Ig heavy chain class switch recombination (CSR).
- The precise function of these 3' enhancers in CSR remains to be fully elucidated.
Purpose of the Study:
- To investigate the role of specific 3' enhancers in Ig heavy chain class switch recombination (CSR).
- To generate and analyze mice with targeted mutations in putative CSR regulatory elements.
Main Methods:
- Generation of mice with germline mutations in the HS3a and HS1,2 enhancers using pgk-neor cassette insertion or loxP-mediated deletion.
- Analysis of B cells from mutant mice to assess defects in Ig heavy chain class switch recombination (CSR).
- Evaluation of pgk-neor gene expression in targeted B cells.
Main Results:
- Mice with pgk-neor cassette insertions in HS3a (HS3aN) or HS1,2 (HS1,2N) enhancers exhibited severe defects in CSR to multiple isotypes.
- CSR defects were attributed to the insertion of the pgk-neor cassette, as CSR was restored in B cells with loxP-mediated deletions (HS3aDelta, HS1,2Delta).
- Induced expression of the targeted pgk-neor genes was regulated similarly to germline CH genes, suggesting a cis-acting regulatory mechanism.
Conclusions:
- A 3' CSR regulatory locus, analogous to the beta-globin gene 5' LCR, plays a critical role in Ig heavy chain class switch recombination.
- This locus likely regulates differential CSR through a promoter competition mechanism.
- The findings provide insights into the complex regulation of immunoglobulin class switching.
Abstract:
The 40-kb region downstream of the most 3' immunoglobulin (Ig) heavy chain constant region gene (Calpha) contains a series of transcriptional enhancers speculated to play a role in Ig heavy chain class switch recombination (CSR). To elucidate the function of this putative CSR regulatory region, we generated mice with germline mutations in which one or the other of the two most 5' enhancers in this cluster (respectively referred to as HS3a and HS1,2) were replaced either with a pgk-neor cassette (referred to as HS3aN and HS1,2N mutations) or with a loxP sequence (referred to as HS3aDelta and HS1,2Delta, respectively). B cells homozygous for the HS3aN or HS1,2N mutations had severe defects in CSR to several isotypes. The phenotypic similarity of the two insertion mutations, both of which were cis-acting, suggested that inhibition might result from pgk-neor cassette gene insertion rather than enhancer deletion. Accordingly, CSR returned to normal in B cells homozygous for the HS3aDelta or HS1,2Delta mutations. In addition, induced expression of the specifically targeted pgk-neor genes was regulated similarly to that of germline CH genes. Our findings implicate a 3' CSR regulatory locus that appears remarkably similar in organization and function to the beta-globin gene 5' LCR and which we propose may regulate differential CSR via a promoter competition mechanism.
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