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Determination of Crystal Structures01:29

Determination of Crystal Structures

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In the late 1800s, the revelation that light extended beyond visible wavelengths led to the discovery of X-rays by Wilhelm Roentgen. Recognized as high-energy electromagnetic radiation with short wavelengths, X-rays prompted exploration into their interaction with crystals. Max von Laue proposed in 1912 that the periodic arrangement of atoms, ions, or molecules in crystals would cause them to diffract X-rays, a hypothesis confirmed through experiments with copper sulfate and zinc sulfide...
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Spin systems where the difference in chemical shifts of the coupled nuclei is greater than ten times J are called first-order spin systems. These nuclei are weakly coupled, and their chemical shifts and coupling constant can generally be estimated from the well-separated signals in the spectrum.
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Homonuclear correlation spectroscopy (COSY) is a powerful technique used in Nuclear Magnetic Resonance (NMR) spectroscopy to study the correlations between nuclei of the same type within a molecule. It provides information about scalar couplings between adjacent nuclei, which helps determine connectivity and structural information. There are several COSY variants, each with its unique strengths and experimental parameters.
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At room temperature, the chair conformer of cyclohexane undergoes rapid ring flipping between two equivalent chair conformers at a rate of approximately 105 times per second. These two chair conformers are in equilibrium. The rapid ring flipping results in the interconversion of the axial proton to an equatorial proton and an equatorial to the axial proton. Such interconversions are too rapid and cannot be detected on the NMR timescale. Hence, the NMR spectrometer cannot distinguish between the...
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Schottky defects arise when some lattice points in a crystal, such as those in NaCl, remain unoccupied, creating lattice vacancies without disturbing the overall electrical neutrality of the crystal. This defect is common in ionic crystals where the positive and negative ions are similar in size, as seen in sodium chloride and cesium chloride. The presence of Schottky defects enables the crystal to conduct electricity to a small extent through an ionic mechanism. Electric fields cause nearby...
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When magnetic nuclei in a sample achieve resonance and undergo relaxation, the signal detected in NMR is an approximately exponential free induction decay. Fourier transform of an exponential decay yields a Lorentzian peak in the frequency domain. Lorentzian peaks in an NMR spectrum are defined by their amplitude, full width at half maximum, and position, where the peak width is governed by the spin-spin relaxation time alone. In real experiments, however, the applied magnetic field is rendered...
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Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy
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Variación de la posición en la cristalografía RMN

Albert Hofstetter1, Lyndon Emsley1

  • 1Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL) , CH-1015 Lausanne, Switzerland.

Journal of the American Chemical Society
|February 2, 2017
PubMed
Resumen
Este resumen es generado por máquina.

Desarrollamos un nuevo método para cuantificar las incertidumbres de posición atómica en las estructuras cristalinas determinadas por la cristalografía de resonancia magnética nuclear (RMN). Este enfoque ofrece una mayor precisión que los métodos tradicionales de difracción de rayos X.

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Área de la Ciencia:

  • Espectroscopia de resonancia magnética nuclear (RMN) en estado sólido
  • La cristalografía
  • Química computacional

Sus antecedentes:

  • La cristalografía RMN basada en desplazamiento químico es una técnica poderosa para determinar las estructuras cristalinas.
  • La cuantificación de las incertidumbres posicionales es crucial para comprender la fiabilidad de estas estructuras.
  • Los métodos existentes para la cuantificación de la incertidumbre en la cristalografía RMN son limitados.

Objetivo del estudio:

  • Desarrollar y validar un nuevo método para cuantificar las incertidumbres de posición en las estructuras cristalinas determinadas por la cristalografía RMN.
  • Para evaluar tanto la precisión de posición promedio como la específica del átomo (isotrópica y anisotrópica).
  • Para comparar la precisión de la cristalografía RMN con la difracción de rayos X de un solo cristal.

Principales métodos:

  • La combinación de simulaciones de dinámica molecular (MD) con cálculos de la teoría funcional de la densidad (DFT).
  • Incorporación de incertidumbres de cambio químico experimentales y computacionales.
  • Aplicación del método a diversas estructuras cristalinas orgánicas, incluidos los productos farmacéuticos.

Principales resultados:

  • El método desarrollado cuantifica con éxito las incertidumbres posicionales promedio y específicas del átomo.
  • Se ha demostrado en las estructuras cristalinas de la cocaína, la flutamida, el ácido flufenámico, la sal de la penicilina GK y la AZD8329.
  • En el caso de la cocaína, la incertidumbre de la raíz media cuadrada posicional (RMSD) fue de 0,17 Å.

Conclusiones:

  • El método propuesto proporciona una forma sólida de evaluar la precisión posicional en la cristalografía RMN.
  • La cristalografía RMN, utilizando esta cuantificación de incertidumbre, logra una mayor precisión posicional que la difracción de rayos X.
  • Este avance mejora la fiabilidad y la utilidad de la cristalografía RMN para la determinación de la estructura.