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Genomics02:02

Genomics

36.9K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
36.9K
Epigenetic Regulation01:37

Epigenetic Regulation

3.1K
Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
3.1K
Inheritance of Chromatin Structures03:17

Inheritance of Chromatin Structures

6.4K
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
6.4K
Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

23.5K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
23.5K
Epistasis Analysis01:09

Epistasis Analysis

5.1K
Although Mendel chose seven unrelated traits in peas to study gene segregation, most traits involve multiple gene interactions that create a spectrum of phenotypes. When the interaction of various genes or alleles at different locations influences a phenotype, this is called epistasis. Epistasis often involves one gene masking or interfering with the expression of another (antagonistic epistasis). Epistasis often occurs when different genes are part of the same biochemical pathway. The...
5.1K
Histone Modification02:32

Histone Modification

13.6K
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
13.6K

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Spatial Profiling of Protein and RNA Expression in Tissue: An Approach to Fine-Tune Virtual Microdissection
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Omics se convierte en epigenómica espacial

Florian Schueder1, Joerg Bewersdorf2

  • 1Department of Cell Biology, Yale School of Medicine, New Haven, CT, USA; Department of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT, USA.

Cell
|November 11, 2022
PubMed
Resumen
Este resumen es generado por máquina.

Las tecnologías ómicas espaciales proporcionan datos moleculares detallados dentro de los tejidos. Los nuevos métodos de multiplexación epigenética como Multiplexed Error-robust FISH (MERFISH) permiten estudiar la regulación de la expresión génica en regiones específicas del tejido.

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Área de la Ciencia:

  • Biología molecular
  • La genómica
  • Biología celular

Sus antecedentes:

  • Las técnicas de ómica espacial ofrecen datos moleculares de alta resolución de los tejidos.
  • La comprensión de la identidad y la función celular se basa en el perfil molecular dentro de contextos espaciales.
  • La regulación epigenómica juega un papel crucial en la expresión génica, pero requiere un análisis espacialmente resuelto.

Objetivo del estudio:

  • Introducir y demostrar un enfoque de multiplexación epigenética para el análisis de la expresión génica espacial.
  • Permitir el estudio de la regulación epigenómica en regiones específicas de los tejidos.
  • Para avanzar en las capacidades de la ómica espacial para comprender los procesos celulares.

Principales métodos:

  • Técnica FISH robusta para errores multiplexados (MERFISH).
  • El perfil molecular de alto rendimiento.
  • Adquisición de datos con resolución espacial en los tejidos.

Principales resultados:

  • MERFISH permite la detección multiplexada y resistente a errores de las moléculas de ARN.
  • El método proporciona información de resolución espacial sobre la expresión génica.
  • Permite la investigación de la regulación epigenómica de una manera específica del tejido.

Conclusiones:

  • Los enfoques de multiplexación epigenética como MERFISH son herramientas poderosas para la transcriptómica espacial.
  • Esta técnica facilita el estudio de la regulación de la expresión génica dentro de microambientes de tejidos definidos.
  • Los avances en la óptica espacial son cruciales para diseccionar sistemas biológicos complejos.