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Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

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Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
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Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

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In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
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Chromatin Modification in iPS Cells01:32

Chromatin Modification in iPS Cells

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Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
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Regulation of Expression at Multiple Steps01:23

Regulation of Expression at Multiple Steps

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The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
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Constitutive and Regulated Gene Expression01:27

Constitutive and Regulated Gene Expression

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Gene expression in prokaryotes is governed by constitutive and regulated systems, allowing cells to balance the production of essential proteins with adaptive responses to environmental changes.Constitutive Gene ExpressionConstitutive, or housekeeping, genes are continuously expressed as they encode proteins vital for fundamental cellular processes. These include enzymes for glycolysis, ribosomal components for protein synthesis, and proteins involved in DNA replication. Their constant...
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Cell Signaling in Plants01:25

Cell Signaling in Plants

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Plant cells communicate to coordinate their cycle of growth, flowering and fruiting, and activities in roots, shoots, and leaves in response to the changing environmental conditions. Plant signaling is distinct from animal signaling. Plants primarily utilize enzyme-linked receptors, whereas the largest class of cell-surface receptors in animals are G-protein coupled receptors (GPCRs). Unlike animals, receptor tyrosine kinases are rare in plants. Instead, plants have a diverse class of...
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Video Experimental Relacionado

Updated: Sep 9, 2025

A Simple Method for Isolation of Soybean Protoplasts and Application to Transient Gene Expression Analyses
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A Simple Method for Isolation of Soybean Protoplasts and Application to Transient Gene Expression Analyses

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Los remodeladores de cromatina asociados a RdDM en la soja: evolución y expresión inducida por el estrés de los genes

Paula Machado de Araújo1, Arthur Gruber2, Liliane Santana Oliveira2

  • 1Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes 28013-602, RJ, Brazil.

Plants (Basel, Switzerland)
|August 28, 2025
PubMed
Resumen

Este estudio identifica nuevos genes CLASSY (CLSY) en la soja y analiza sus relaciones evolutivas. Estos reguladores epigenéticos muestran expresión modulada por el estrés, ofreciendo información sobre la soja

Palabras clave:
CLSY1-4 (en inglés)Glicina máximaMetilación del ADN dirigida por ARNRegulación epigenéticaFilogénesisEl perfil oculto de los modelos de Markov

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Área de la Ciencia:

  • La epigenética y la biología molecular
  • Genómica de las plantas
  • Biología evolutiva

Sus antecedentes:

  • La metilación dirigida por ARN (RdDM) es un mecanismo epigenético clave en las plantas, que involucra proteínas de remodelación de cromatina como CLASSY (CLSY).
  • El papel de la familia de genes CLSY en la soja, un cultivo vital, no se entiende bien.
  • Las investigaciones anteriores identificaron proteínas CLSY principalmente en la Arabidopsis thaliana.

Objetivo del estudio:

  • Identificar nuevos miembros de la familia CLSY en la soja mediante el uso de modelos de Markov ocultos de perfil (MMH de perfil).
  • Investigar las relaciones filogenéticas de los genes CLSY en diversos linajes de plantas.
  • Explorar los patrones de expresión de los genes CLSY en la soja bajo condiciones de estrés abiótico.

Principales métodos:

  • Se utilizaron HMM de perfil para la identificación del gen CLSY en la soja y otras especies vegetales.
  • Se realizaron análisis filogenéticos para comprender la evolución del gen CLSY.
  • Utilizó RT-qPCR para evaluar la expresión génica bajo estrés osmótico y salino durante la germinación.

Principales resultados:

  • Se han identificado dos nuevos candidatos de soja CLSY1-2 y un candidato DRD1.
  • Se detectaron por primera vez los genes CLSY y DRD1 en Aquilegia coerulea.
  • El análisis filogenético reveló dos grupos principales de CLSY, con la expansión de la familia de soja vinculada a eventos de duplicación genética.
  • CLSY y otros reguladores epigenéticos mostraron una expresión modulada por el estrés en las plántulas de soja.

Conclusiones:

  • Mejora la comprensión de la evolución y los mecanismos de expansión de la familia CLSY en las plantas, particularmente en la soja.
  • Proporciona nuevos conocimientos sobre el papel de los genes CLSY en la respuesta de la soja al estrés abiótico.
  • Destaca la importancia de la regulación epigenética en la adaptación de los cultivos a los desafíos ambientales.