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Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

7.4K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
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The Eukaryotic Promoter Region02:40

The Eukaryotic Promoter Region

3.1K
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Gene Duplication and Divergence02:37

Gene Duplication and Divergence

6.3K
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was  generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
6.3K
Gene Conversion02:08

Gene Conversion

9.9K
Other than maintaining genome stability via DNA repair, homologous recombination plays an important role in diversifying the genome. In fact, the recombination of sequences forms the molecular basis of genomic evolution. Random and non-random permutations of genomic sequences create a library of new amalgamated sequences. These newly formed genomes can determine the fitness and survival of cells. In bacteria, homologous and non-homologous types of recombination lead to the evolution of new...
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Combinatorial Gene Control02:33

Combinatorial Gene Control

8.4K
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
8.4K
Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

6.1K
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
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Video Experimental Relacionado

Updated: Sep 9, 2025

In vivo Application of the REMOTE-control System for the Manipulation of Endogenous Gene Expression
08:54

In vivo Application of the REMOTE-control System for the Manipulation of Endogenous Gene Expression

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Método de diseño de promotor de novo basado en un algoritmo de evolución generativa y dinámica profunda

Yijun Gu1, Jianye Su2, Junfeng Xia2

  • 1Information Materials and Intelligent Sensing Laboratory of Anhui Province, Anhui University, 111 Jiulong Road, Hefei 230601 Anhui, China.

Nucleic acids research
|August 28, 2025
PubMed
Resumen
Este resumen es generado por máquina.

Desarrollamos PromoDGDE, un nuevo método para diseñar promotores sintéticos con niveles de expresión génica ajustables. Este enfoque mejora la ingeniería metabólica y la terapia génica mediante la creación de promotores funcionales para *E. coli* y *S. cerevisiae*.

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Área de la Ciencia:

  • Biología sintética
  • Biología computacional
  • Biología molecular

Sus antecedentes:

  • Los promotores son esenciales para controlar la expresión génica, vital para la ingeniería metabólica y la terapia génica.
  • Los métodos actuales de diseño de promotores a menudo priorizan la alta expresión, pasando por alto la necesidad de intensidades reguladoras ajustables.

Objetivo del estudio:

  • Introducir PromoDGDE, un nuevo marco de aprendizaje profundo para el diseño de promotores sintéticos con niveles de expresión específicos.
  • Para demostrar la eficacia del método en Escherichia coli y Saccharomyces cerevisiae.

Principales métodos:

  • Utilizando Diffusion-GAN para aprender las características de la secuencia de promotores naturales y generar nuevos candidatos.
  • Empleando aprendizaje por refuerzo y algoritmos evolutivos para la optimización dinámica de secuencias de promotores sintéticos.

Principales resultados:

  • PromoDGDE superó a los métodos existentes en silico, generando promotores biológicamente relevantes con las funciones deseadas.
  • Los experimentos in vivo confirmaron la actividad de expresión de los promotores sintéticos, logrando más del 60% de los efectos reguladores esperados.

Conclusiones:

  • PromoDGDE ofrece una solución eficaz y flexible para el diseño de promotores sintéticos con un control regulatorio preciso.
  • El método tiene implicaciones significativas para el avance de aplicaciones en biología sintética, incluida la construcción de vías metabólicas y la terapia génica.