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Análisis sin prefijos para fusionar grandes BWT
Diego Díaz-Domínguez1, Travis Gagie2, Veronica Guerrini3
1University of Helsinki, Finland.
Abstract:
When building Burrows-Wheeler Transforms (BWTs) of truly huge datasets, prefix-free parsing (PFP) can use an unreasonable amount of memory. In this paper we show how if a dataset can be broken down into small datasets that are not very similar to each other - such as collections of many copies of genomes of each of several species, or collections of many copies of each of the human chromosomes - then we can drastically reduce PFP's memory footprint by building the BWTs of the small datasets and then merging them into the BWT of the whole dataset.
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