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Updated: Jan 8, 2026

Development of Inhibitors of Protein-protein Interactions through REPLACE: Application to the Design and Development Non-ATP Competitive CDK Inhibitors
Published on: October 26, 2015
Superación de la barrera "intratable": Descubrimiento guiado por la estructura de un potente antagonista de CD28 de
Saurabh Upadhyay1, Hossam Nada1, Sungwoo Cho1
1Department of Radiology, Molecular Imaging Innovations Institute (MI3), Weill Cornell Medicine, New York, NY 10065, USA.
Abstract:
CD28 is the prototypical costimulatory receptor that integrates with TCR signaling to sustain T-cell activation, proliferation, and survival. While indispensable for adaptive immunity, persistent CD28 signaling drives autoimmunity, graft-versus-host disease, and inflammatory pathology. Despite its therapeutic relevance, CD28 has long been regarded as an undruggable target due to its flat, solvent-exposed dimer interface, restricting modulation to biologics. Previous reports of small molecule CD28 inhibitors have been limited by weak potency. Here, we report the first structure-guided optimization yielding a best-in-class small molecule CD28 antagonist that overcomes these limitations. Guided by biophysical and functional assays, optimization of the preliminary CD28 hits 8VS and 22VS yielded BPU11, a chemically tractable lead with markedly improved pharmacokinetic stability, aqueous solubility, and plasma persistence. BPU11 consistently disrupted CD28-B7 interactions across biochemical and cellular systems, and potently suppressed T-cell activation in both a tumor-PBMC co-culture and a human PBMC-mucosal tissue model, functionally mimicking the biologic antagonist FR104. Molecular docking and dynamics simulations revealed engagement of the lipophilic canyon of CD28 through stabilizing hydrogen-bonding and hydrophobic interactions. These findings redefine the druggability of CD28, expand the pharmacological space of immune checkpoint modulation beyond antibodies, and establish BPU11 as a foundation for next-generation small molecule immunotherapies.

