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Using Changes in Leaf Transmission to Investigate Chloroplast Movement in Arabidopsis thaliana
Published on: July 14, 2021
Imagen del movimiento de cloroplastos bajo diferentes regímenes de luz con una cámara hiperespectral
Paweł Hermanowicz1, Anna Hebda1, Justyna Łabuz1
1Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7A, Kraków, Poland.
Abstract:
Plants move chloroplasts in response to light, changing the optical properties of leaves. Low irradiance induces chloroplast accumulation, while high irradiance triggers chloroplast avoidance. Chloroplast movements may be monitored through changes in leaf transmittance and reflectance, typically in red light. We present a step-by-step procedure for the detection of chloroplast positioning using reflectance hyperspectral imaging in white light. We show how to employ machine learning methods to classify leaves according to the chloroplast positioning. The convolutional network is a method of choice for the analysis of the reflectance spectra, as it allows low levels of misclassification. As a complementary approach, we propose a vegetation index, called the Chloroplast Movement Index (CMI), which is sensitive to chloroplast positioning. Our method offers a high-throughput, contactless way of chloroplast movement detection. Key features • Protocol for detached leaves handled in laboratory conditions. • Based on differential (dark-adapted versus irradiated) hyperspectral images of plant leaves. • Data analysis includes machine learning methods and the calculation of a vegetation index. • Requires irradiation equipment apart from the hyperspectral camera set.
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