転写終止タンパク質の結合は,新生RNAとテンプレートDNAに結合する
1Department of Biochemistry and Molecular Biophysics and Institute of Cancer Research, Columbia University, New York, NY 10032, USA.
まとめ
Coliphage HK022 Nunタンパク質は新生トランスクリプトと結合し,RNAポリメラーゼと相互作用してトランスクリプションをブロックします. ヌンはRNAポリメラーゼをDNAに固定することで転写を停止し,クロスリンクを用いて研究されたメカニズムである.
科学分野:
- 分子生物学は分子生物学である.
- ウイルス学 ウイルス学 ウイルス学
- バイオケミストリー バイオケミストリー
背景:
- コリファージHK022 ヌンタンパク質は転写を調節する.
- Nunのアミノ端末モチーフは新生RNAと結合し,そのカルボキシル端末ドメインはRNAポリメラーゼ (RNAP) と相互作用する.
- NunによるRNAP相互作用は,転写の延長を阻害する.
研究 の 目的:
- ヌン・カーボキシル末端の分子相互作用を調査する.
- Nunが転写延長を停止するメカニズムを解明する.
- ヌンのRNA結合における亜鉛 (Zn2+) とE. coli NusAの役割を理解する.
主な方法:
- Nunのカルボキシル末端をクロスリンカーで化学的に改造した.
- クロスリンクを使用して,Nun,RNAポリメラーゼ,DNAの相互作用を研究する.
- 亜鉛とNusaAがNun-RNAの相互作用に及ぼす影響を調査する.
主要な成果:
- Nunカルボキシル末端はE. coli NusA.と接触する.
- ヌン・カルボキシル末端内でZn2+依存の分子内接触が観察されました.
- NunはDNAテンプレートと,一時停止した転写延長複合体で交互にリンクされた.
- NunはRNAPをDNAに固定することで転写を停止します.
結論:
- Nunは,そのカルボキシル末端を利用してNusaと相互作用し,分子内接触を形成します.
- Nunは,RNAPをDNAテンプレートに物理的に固定することによって,転写を停止します.
- これらの発見は,ファグ-宿主転写調節機構の洞察を提供します.
関連する概念動画
Bacterial RNA Polymerase
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
Eukaryotic RNA Polymerases
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
All three eukaryotic RNAPs require specific transcription factors, of which the...
Transcription Attenuation in Prokaryotes
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure. Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
Bacterial Transcription
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription Initiation
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...
Transcription in Prokaryotes
Transcription is a highly regulated process that converts genetic information into RNA molecules. The transcription cycle is divided into three key stages: initiation, elongation, and termination, each driven by specific molecular mechanisms.Initiation of TranscriptionIn bacteria, transcription begins when the RNA polymerase core enzyme associates with a sigma factor to form a holoenzyme. For example, the E. coli sigma factor called σ70 forms a holoenzyme, which recognizes the -10 (Pribnow box)...


