アラビドプシスのゲノム複製の起源
T J Vision1, D G Brown, S D Tanksley
1USDA-ARS Center for Agricultural Bioinformatics, 604 Rhodes Hall, Cornell University, Ithaca, NY 14853, USA. tv23@cornell.edu
まとめ
アラビドプシス・タリアナの大きなセグメンタル重複は,古代のゲノム重複の出来事から生じた. この歴史を理解することは,アラビドプシスをアンジオスペルムのゲノミクスのモデルとして使用するための鍵です.
科学分野:
- 植物ゲノミクスは,
- 進化生物学の進化生物学について
- アラビドプシス・タリアナの研究
背景:
- アラビドプシス・タリアナのゲノムでは,大きなセグメンタル重複が一般的です.
- これらの重複の起源と進化の歴史は,大部分が特徴づけられていないままです.
研究 の 目的:
- アラビドプシス・サリアナのゲノムにおける大きなセグメンタル重複の起源を調査する.
- ゲノムを形成した複製イベントのタイミングと性質を明らかにする.
主な方法:
- 比較ゲノミクス分析. 比較ゲノミクス分析.
- 複製イベントの系統遺伝的再構築.
主要な成果:
- 少なくとも4つの異なる大規模な重複イベントを特定しました.
- これらの出来事は1億2億年前と年代付けされ,血管精子の多様化と一致しました.
- これらのイベントが大きなセグメンタル重複の主要な原因であることを実証しました.
結論:
- アラビドプシス・サリアナのゲノムの構造は,古代の大規模な複製イベントの産物である.
- この複雑な構造の歴史を理解することは,アラビドプシスを他のアンジオスペルムの遺伝子モデルとして活用するために不可欠です.
関連する概念動画
Genome Size and the Evolution of New Genes
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
Gene Families
Gene families consist of groups of genes proposed to have originated from a common ancestor. Typically these arise through events in which a gene or genes are mistakenly duplicated during cell division. Unlike their parent genes (which are subject to selection pressure to maintain function), these gene copies do not need to preserve their sequences and may evolve at a relatively faster rate.
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...
Chromosome Structure
A functional eukaryotic chromosome must contain three elements: a centromere, telomeres, and numerous origins of replication.
The centromere is a DNA sequence that links sister chromatids. This is also where kinetochores, protein complexes to which spindle microtubules attach, are constructed after the chromosome is replicated. The kinetochores allow the spindle microtubules to move the chromosomes within the cell during cell division.
Telomeres consist of non-coding repetitive nucleotide...
The centromere is a DNA sequence that links sister chromatids. This is also where kinetochores, protein complexes to which spindle microtubules attach, are constructed after the chromosome is replicated. The kinetochores allow the spindle microtubules to move the chromosomes within the cell during cell division.
Telomeres consist of non-coding repetitive nucleotide...
Gene Duplication and Divergence
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
Exon Recombination
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Genome Size and the Evolution of New Genes
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.


