関連する実験動画
Updated: May 19, 2026

06:51
Parallel High Throughput Single Molecule Kinetic Assay for Site-Specific DNA Cleavage
Published on: May 6, 2020
単一のRecBCDヘリカーゼ/ヌクレアゼ分子によるChi配列認識とDNA転位
1Department of Biochemistry, Brandeis University, Waltham, Massachusetts 02454-9110, USA.
Nature
|February 24, 2001
まとめ
RecBCD酵素というものです.
科学分野:
- 分子生物学は分子生物学である.
- バイオケミストリー バイオケミストリー
- 遺伝学 遺伝学とは
背景:
- Escherichia coliにおける再結合DNA修復は,ヘリカーゼとヌクレアゼ活動を持つ複雑な酵素であるRecBCDタンパク質に依存しています.
- RecBCDタンパク質は,DNA配列"チ"を認識し,その分裂活動を変化させ,再結合を促進します.
- 以前のモデルでは,活動変化を説明するために"チ"のRecDサブユニット放出を示唆していました.
研究 の 目的:
- 単一の RecBCD 分子の転位機構を調査する.
- "チ"配列が単一分子レベルで RecBCD 酵素の活性をどのように変化させるかを解明する.
主な方法:
- 結合粒子光顕微鏡を用いて,単一のRecBCD分子を追跡した.
- 顕微鏡のポリシュチレンビーズは,可視化のためにRecDサブユニットに接続されました.
- 酵素の転位速度と"チ"配列の行動が正確に測定されました.
主要な成果:
- 単一の RecBCD 分子は,一定の速度で単方向転位を示します.
- "チ"配列は,重要なビーズ解離を引き起こさないため,RecDサブユニット放出がないことを示しています.
- "チー"の酵素活性変化は,RecDサブユニットシフトなしに起こります.
結論:
- RecBCDトランスロケーションは,そのDNA解速度と一致する一方的なプロセスです.
- "Chi"シーケンスでは,RecBCDサブユニットのエジェクションではなく,コンフォメーションスイッチを通じてRecBCDの活動を変更します.
- この研究は,RecBCD.によるDNA修復調節のメカニズム的基礎に関する新しい洞察を提供します.
関連する概念動画
DNA Helicases
DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
The Replisome
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
Homologous Recombination
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
Restarting Stalled Replication Forks
DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...
Conservative Site-specific Recombination and Phase Variation
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
Single-Strand DNA Binding Proteins
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...

