関連する実験動画
Updated: Jul 10, 2026

09:36
RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
転写の構造的基礎:RNAポリメラーゼIIによってRNAをDNAから分離する
Kenneth D Westover1, David A Bushnell, Roger D Kornberg
1Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA.
まとめ
研究者はRNAポリメラーゼII複合体の構造を決定した. これは,遺伝子転写とプロモーター脱出に不可欠なDNAからRNAがどのように分離するかを明らかにします.
科学分野:
- 分子生物学は分子生物学である.
- 構造生物学 構造生物学とは
- バイオケミストリー バイオケミストリー
背景:
- RNAポリメラーゼIIは,遺伝子転写の中心に位置しています.
- そのメカニズム,特にプロモーター脱出を理解することは,遺伝子調節の鍵です.
- 以前の構造では,移転後の状態に関する詳細が欠けていました.
研究 の 目的:
- 転位後の状態におけるRNAポリメラーゼII-転写複合体の構造を解明する.
- RNA-DNAハイブリッドヘリックス形成と解離のメカニズムを理解する.
- プロモーター脱出におけるタンパク質と核酸の相互作用の役割を調査する.
主な方法:
- 複合体の高解像度構造を決定するために,X線結晶学またはCryo-EMを使用します.
- 核酸の相互作用とタンパク質ループの関与を研究するための生化学的分析.
- 重要なタンパク質と核酸のインターフェースを特定するための構造分析.
主要な成果:
- 構造は,RNA-DNAハイブリッドの3'端に空白があるトランスロケーション後の状態を明らかにします.
- タンパク質ループによって形成された新しい鎖/ループネットワークがRNA-DNA分離を媒介する.
- このネットワークは,中絶開始からプロモーター脱出への移行に不可欠です.
結論:
- 決定された構造は,RNAポリメラーゼIIの機能に関する原子レベルの洞察を提供します.
- 鎖/ループネットワークは,転写中にRNAの放出を促進するための重要なイノベーションです.
- この発見は,遺伝子転写の基本的プロセスとその調節に関する私たちの理解を前進させます.
関連する概念動画
Transcription
Overview
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
RNA Splicing
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
Bacterial RNA Polymerase
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
RNA-seq
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases.
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while microarray-based...
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while microarray-based...
Transcription
Transcription is the synthesis of RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in correctly synthesizing messenger RNA (mRNA). Transcriptional regulation is responsible for the differentiation of different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds of RNA Molecules
In eukaryotes,...
Transcription Can Produce Different Kinds of RNA Molecules
In eukaryotes,...
Nucleic Acid Structure
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA has a double-helix structure. The...
DNA Structure
DNA has a double-helix structure. The...

