ガス相におけるカチオン化されたグルタミンと構造アナログの構造と水分化エンタルピー
Andrew S Lemoff1, Matthew F Bush, Chih-Che Wu
1Department of Chemistry, University of California, Berkeley, California 94720-1460, USA.
Journal of the American Chemical Society
|July 21, 2005
まとめ
リチウムとナトリウムイオンは,水分子と弱い結合で,非ズウィテリオン形式でグルタミンに結合します. この結合構造は,赤外線解離実験と理論的な計算によって確認されています.
科学分野:
- 物理化学 物理化学
- 生物物理化学 生物物理化学
- コンピューティング・ケミストリー
背景:
- グルタミンなどのアミノ酸は,生物学的システムにおいて重要な役割を果たします.
- アミノ酸との溶解と金属イオンの相互作用を理解することは,生化学にとって不可欠です.
- 以前の研究では,アミノ酸誘導体との金属イオン相互作用が調査されました.
研究 の 目的:
- 水と水なしのリチウム酸およびナトリウム酸グルタミン複合体の構造を調査する.
- これらの複合体に対する水分子の結合エネルギーを決定する.
- 金属イオン複合化におけるズウィテリオン型と非ズウィテリオン型の役割を解明する.
主な方法:
- ブラックボディ赤外線放射解離 (BIRD) 実験は,水の損失を調査するために使用されました.
- マスター方程式モデリングは,値解離エネルギー (E(o)) を決定するために適用されました.
- 密度関数理論 (DFT) の計算は,複雑な構造とエネルギー学をモデル化するために使用されました.
主要な成果:
- リチウムグルタミンとナトリウムグルタミンから水分が失われる際の値解離エネルギーは,それぞれ63 ± 1と53 ± 1kJ/molと決定されました.
- これらの値は,これらの金属複合体におけるグルタミンに対する非ズウィテリオン構造を示しています.
- 水の結合エネルギーはズウィテリオン型よりも低いことが判明し,ズウィテリオン型以外の複合性を示唆しています.
結論:
- リチウム酸およびナトリウム酸グルタミンは,主に非ズウィテリオン構造を採用しています.
- 金属イオンは,アミノ酸の骨格とサイドチェーンのアミド酸素と連携する.
- 水分子は,ズウィテリオン型と比較して,これらの非ズウィテリオン型複合体に強く結合しない.
関連する概念動画
Acid Strength and Molecular Structure
Binary Acids and Bases
In the absence of any leveling effect, the acid strength of binary compounds of hydrogen with nonmetals (A) increases as the H-A bond strength decreases down a group in the periodic table. For group 17, the order of increasing acidity is HF < HCl < HBr < HI. Likewise, for group 16, the order of increasing acid strength is H2O < H2S < H2Se < H2Te. Across a row in the periodic table, the acid strength of binary hydrogen compounds increases with increasing...
In the absence of any leveling effect, the acid strength of binary compounds of hydrogen with nonmetals (A) increases as the H-A bond strength decreases down a group in the periodic table. For group 17, the order of increasing acidity is HF < HCl < HBr < HI. Likewise, for group 16, the order of increasing acid strength is H2O < H2S < H2Se < H2Te. Across a row in the periodic table, the acid strength of binary hydrogen compounds increases with increasing...
Molecular Structure and Acidity
An acid can be deprotonated to form a conjugate base or an anion. If the produced anion is more stable, then the acid is stronger. On the contrary, if the anion is unstable, then the acid is weaker. Hence, to determine the acidity of the compound, the stability of its conjugate base is studied using various factors.
The size effect explains the change in atomic size on acidity. When comparing the acids formed from elements that belong to the same column in the periodic table, their atomic sizes...
The size effect explains the change in atomic size on acidity. When comparing the acids formed from elements that belong to the same column in the periodic table, their atomic sizes...
Degree of Unsaturation
The degree of unsaturation (U), or index of hydrogen deficiency (IHD), is defined as the difference in the number of pairs of hydrogen atoms between the compound and the acyclic alkane with the same number of carbon atoms. Each double bond or ring costs two hydrogen atoms compared to a saturated analog and results in one degree of unsaturation.
The degree of unsaturation for hydrocarbons is U = (2C + 2 − H) / 2, where C is the number of carbon atoms and H is the number of hydrogen atoms.
For...
The degree of unsaturation for hydrocarbons is U = (2C + 2 − H) / 2, where C is the number of carbon atoms and H is the number of hydrogen atoms.
For...
Structures of Carboxylic Acid Derivatives
Structure of Carboxylic Acid Derivatives
Carboxylic acid derivatives contain an acyl group attached to a heteroatom such as chlorine, oxygen, or nitrogen. The carbonyl carbon and oxygen are both sp2-hybridized with an unhybridized p orbital.
The three sp2 orbitals of the carbonyl carbon form three σ bonds, one each with the carbonyl oxygen, the α carbon, and the heteroatom, whereas the other two sp2 orbitals of the carbonyl oxygen are occupied by the lone pairs. Further, the unhybridized p...
Carboxylic acid derivatives contain an acyl group attached to a heteroatom such as chlorine, oxygen, or nitrogen. The carbonyl carbon and oxygen are both sp2-hybridized with an unhybridized p orbital.
The three sp2 orbitals of the carbonyl carbon form three σ bonds, one each with the carbonyl oxygen, the α carbon, and the heteroatom, whereas the other two sp2 orbitals of the carbonyl oxygen are occupied by the lone pairs. Further, the unhybridized p...
Structure of Amines
The hybridized nitrogen atom in amines possesses a lone pair of electrons and is bound to three substituents with a bond angle of around 108°, which is less than the tetrahedral angle of 109.5°. However, the C–N–H bond angle is slightly larger at 112°, with a carbon–nitrogen bond length of 147 pm. This carbon–nitrogen bond length of of amines is longer than the carbon–oxygen bond of alcohols (143 pm) but shorter than alkanes’ carbon–carbon bond (154 pm). These aspects are illustrated in Figure...
Structures of Aldehydes and Ketones
Vanillin—a flavoring agent in vanilla, cinnamaldehyde—a molecule responsible for the distinct smell of cinnamon, and acetone—a strong-smelling ingredient in nail polish removers, all belong to a class of carbonyl compounds called aldehydes and ketones (Figure 1). Although both aldehydes and ketones contain the characteristic carbonyl (C=O) bond, their chemical structures vary with respect to the groups directly attached to the carbonyl carbon.
In aldehydes (Figures 1a and 1b), the carbonyl...
In aldehydes (Figures 1a and 1b), the carbonyl...


