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Monitoring eIF4F Assembly by Measuring eIF4E-eIF4G Interaction in Live Cells
Published on: May 1, 2020
eEF3の構造と,Eサイトからの転送RNA放出のメカニズム
Christian B F Andersen1, Thomas Becker, Michael Blau
1Centre for Structural Biology, Department of Molecular Biology, University of Aarhus, Gustav Wieds Vej 10C, DK-8000 Aarhus, Denmark.
Nature
|August 25, 2006
まとめ
ATPaseである真菌トランスレーション延長因子eEF3は,タンパク質合成に不可欠です. その構造とリボソームとの相互作用は,EサイトからtRNAの放出を促進する新しい結合部位を明らかにします.
科学分野:
- 分子生物学は分子生物学である.
- 構造生物学 構造生物学とは
- バイオケミストリー バイオケミストリー
背景:
- 延長因子eEF3は,タンパク質翻訳に不可欠な真菌特異のATPアゼです.
- リボソームのA部位へのアミノアシル-tRNA結合と,E部位からのデアシル-tRNAのクリアランスに作用する.
研究 の 目的:
- Saccharomyces cerevisiae eEF3機能の構造的基礎を決定するために.
- eEF3がリボソームと相互作用してトランスレーションを促進するメカニズムを解明する.
主な方法:
- eEF3.3の結晶構造を決定するためのX線結晶学.
- クリオ電子顕微鏡で80Sリボソームに結合したeEF3を視覚化します.
主要な成果:
- Saccharomyces cerevisiae eEF3の結晶構造は,HEATの繰り返し,4ヘリックスバンドルとABC型ATPaseドメインを明らかにし,ABC2に染色体がある.
- クリオ-EM構造は,eEF3がATP結合形態でリボソームのE部位近くの新しい部位に結合することを示しています.
- クロモドメインは,リボソームのL1茎を安定させ,tRNAの放出を促進する可能性がある.
結論:
- eEF3は,翻訳を容易にするためにユニークなリボソーム結合部位を使用します.
- eEF3の構造的な洞察は,真菌のタンパク質合成におけるその役割のメカニズム的理解を提供します.
関連する概念動画
Eukaryotic RNA Polymerases
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
All three eukaryotic RNAPs require specific transcription factors, of which the...
Transfer RNA Synthesis
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Improving Translational Accuracy
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
Initiation of Translation
Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
Directing Proteins to the Rough Endoplasmic Reticulum
The organelle-specific signaling sequences direct proteins synthesized in the cytosol to their final destination like ER, mitochondria, peroxisomes, etc. Some of the proteins directed to ER are then trafficked via vesicles to other organelles within the cell or the extracellular environment through the Golgi complex. For example, the rough ER synthesizes soluble proteins for transportation to the lysosomes or secretion out of the cell. It can also synthesize transmembrane proteins that can...
Transfer RNA Synthesis
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...

