ペプチド結合形成は,ライボソームのシャイン-ダルガーノ相互作用を不安定化させます
Sotaro Uemura1, Magdalena Dorywalska, Tae-Hee Lee
1Department of Physics, Stanford University, Stanford, California 94305, USA.
Nature
|March 23, 2007
まとめ
シャイン-ダルガーノ配列は,ペプチド結合形成前にリボソーム-mRNA結合の安定性を高めます. 最初のペプチド結合が形成された後,この相互作用は弱まり,リボソームの移動を翻訳中に促進します.
科学分野:
- 分子生物学は分子生物学である.
- バイオフィジックス 生物物理学
- 遺伝学 遺伝学とは
背景:
- リボソームは,メッセンジャーRNA (mRNA) をタンパク質配列に変換する.
- リボソーム-mRNAの相互作用は,翻訳の開始と延長に不可欠です.
- シャイン-ダルガーノ (SD) 配列は,細菌の翻訳開始に不可欠です.
研究 の 目的:
- 光学ピンチを使って,単一のリボソーム複合体とmRNAの間の断裂力を測定する.
- リボソーム-mRNA複合体の安定性におけるシャイン-ダルガーノ (SD) 配列の役割を調査する.
- ペプチド結合形成がリボソーム-mRNA相互作用の強さにどのように影響するかを決定する.
主な方法:
- 単一リボソーム-mRNAの破裂力を定量化するための光学ピンチエーアッセイを開発しました.
- リボソーム複合体の破裂力を SD 配列と無配列で比較した.
- アミノアシルtRNA (Phe-tRNA (((Phe)) とペプチジルtRNAアナログ (N-アセチル-Phe-tRNA (((Phe)) を使って,異なった翻訳段階を模倣した.
主要な成果:
- SD配列の除去は,Phe-tRNA (((Phe)) がA部位にあるとき,リボソーム-mRNAの破裂力を有意に減少させた.
- SD配列の存在は,ペプチド結合形成前にリボソーム-mRNA複合体の安定性を高めます.
- 最初のペプチド結合の形成は,N-アセチル-フェ-tRNA (((Phe)) によって模倣され,SDを含むmRNAとSD欠乏 mRNAの両方に対して同様に破裂力を弱めた.
結論:
- SD配列の相互作用は,翻訳開始時にリボソーム-mRNA複合体の安定性に大きく貢献する.
- 最初のペプチド結合形成はSDの相互作用を不安定化し,リボソームがmRNAに握っている力を弱める.
- この弱化は,早期の翻訳段階でmRNAに沿ったリボソーム転位を促進するために重要である.
関連する概念動画
Protein Organization
Overview
Peptide Bonds
A peptide bond covalently attaches amino acids through a dehydration reaction. One amino acid's carboxyl group and another amino acid's amino group combine, releasing a water molecule. The resulting bond is the peptide bond. The products that such linkages form are peptides. As more amino acids join this growing chain, the resulting chain is a polypeptide. Each polypeptide has a free amino group at one end. This end has the N-terminal, or the amino-terminal, and the other end has a free...
Termination of Translation
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
Protein Organization
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence.
The primary structure of a protein is its amino acid sequence.
Translation in Prokaryotes
Prokaryote translation is a complex, highly coordinated process that converts genetic information from mRNA into functional proteins. It involves three stages: initiation, elongation, and termination, each facilitated by specific molecular components.Initiation of TranslationThe process begins with the assembly of the ribosomal subunits and initiation factors on the mRNA. In bacteria, the 30S ribosomal subunit recognizes the Shine-Dalgarno sequence in the mRNA, a conserved region upstream of...
Translational Regulation
Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...


