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関連する概念動画

Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Heterochromatin02:38

Heterochromatin

The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at 9th...
Genomic DNA in Eukaryotes00:58

Genomic DNA in Eukaryotes

Eukaryotes have large genomes compared to prokaryotes. To fit their genomes into a cell, eukaryotic DNA is packaged extraordinarily tightly inside the nucleus. To achieve this, DNA is tightly wound around proteins called histones, which are packaged into nucleosomes that are joined by linker DNA and coil into chromatin fibers. Additional fibrous proteins further compact the chromatin, which is recognizable as chromosomes during certain phases of cell division.
Euchromatin01:01

Euchromatin

The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions take up more dye, appearing darker, while the less-compact areas take up less dye and appear lighter. Based on the compaction level, chromatins are classified into two primary forms – euchromatin and heterochromatin.
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Euchromatin01:01

Euchromatin

The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions take up more dye, appearing darker, while the less-compact areas take up less dye and appear lighter. Based on the compaction level, chromatins are classified into two primary forms – euchromatin and heterochromatin.
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Conserved Binding Sites01:49

Conserved Binding Sites

Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...

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関連する実験動画

Updated: Jul 13, 2026

Single-Cell Factor Localization on Chromatin using Ultra-Low Input Cleavage Under Targets and Release using Nuclease
09:20

Single-Cell Factor Localization on Chromatin using Ultra-Low Input Cleavage Under Targets and Release using Nuclease

Published on: February 1, 2022

人間のゲノムの超保存された要素は,超選択されたものです.

Sol Katzman1, Andrew D Kern, Gill Bejerano

  • 1Department of Biomolecular Engineering, University of California, Santa Cruz, CA 95064, USA.

Science (New York, N.Y.)
|August 19, 2007
PubMed
まとめ

人間のゲノムの超保存された要素は,高度に保存されたDNA配列である. これらの領域は,タンパク質をコードする遺伝子よりも強い負の選択を経験し,以前の仮説に異議を唱える.

科学分野:

  • ゲノミクスゲノミクスとは
  • 進化生物学の進化生物学について
  • バイオインフォマティックス

背景:

  • 超保存元素 (UCE) は,ヒト,マウス,ラットのゲノムで同一のDNA配列 (>200 bp) である.
  • ほとんどのUCEは非コーディングであり,哺乳類や鳥類で3億年以上保存されています.
  • UCE保全の進化的原動力は十分に理解されていない.

研究 の 目的:

  • 超保存元素に作用する選択的圧力を調査する.
  • UCEが突然変異による寒い点か,またはネガティブ・セレクション下にあるかを判断する.
  • UCEの選択強度をタンパク質をコードする遺伝子と比較するために.

主な方法:

  • UCEにおける派生アレル周波数スペクトルの分析.
  • 保護された地域を特定するための比較ゲノミクス.
  • 配列データのバイオ情報分析.

主要な成果:

  • 超保存元素は突然変異の寒いスポットではない.
  • UCEは,著しく負の進化的選択を受けている.
  • UCEのネガティブな選択は,タンパク質をコードする遺伝子よりも強い.

さらに関連する動画

Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells
14:26

Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells

Published on: April 4, 2016

Ultra-long Read Sequencing for Whole Genomic DNA Analysis
10:34

Ultra-long Read Sequencing for Whole Genomic DNA Analysis

Published on: March 15, 2019

関連する実験動画

Last Updated: Jul 13, 2026

Single-Cell Factor Localization on Chromatin using Ultra-Low Input Cleavage Under Targets and Release using Nuclease
09:20

Single-Cell Factor Localization on Chromatin using Ultra-Low Input Cleavage Under Targets and Release using Nuclease

Published on: February 1, 2022

Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells
14:26

Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells

Published on: April 4, 2016

Ultra-long Read Sequencing for Whole Genomic DNA Analysis
10:34

Ultra-long Read Sequencing for Whole Genomic DNA Analysis

Published on: March 15, 2019

結論:

  • UCEの極端な保存は,強い負の選択によって引き起こされています.
  • この発見は,突然変異によるコールドスポット仮説を否定するものである.
  • UCEは,激しい進化的制約下にある重要な規制や機能領域を表しています.