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菌類における遺伝子複製の自然史と進化原理
Ilan Wapinski1, Avi Pfeffer, Nir Friedman
1Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, Massachusetts 02142, USA.
Nature
|September 7, 2007
まとめ
遺伝子の複製と喪失は,機能的なイノベーションを推進しますが,遺伝子の機能によって制約されています. ゲノム全体の複製は,この範囲を拡大し,規制の相違とネットワークのモジュール化につながります.
科学分野:
- 進化生物学の進化生物学について
- ゲノミクスゲノミクスとは
- 分子生物学は分子生物学である.
背景:
- 遺伝子の複製と喪失は,進化における機能的イノベーションの主要な原動力である.
- 遺伝子の複製と喪失を制御する原理を理解することは,進化過程の解読に不可欠です.
- ゲノムシーケンシングの進歩により,遺伝子ファミリー進化の包括的な分析が可能になりました.
研究 の 目的:
- 多種間の遺伝子の進化史を解明する方法を開発する.
- 遺伝子ツリーと真菌におけるオートロジー/パラロジー関係の全ゲノムカタログを作成する.
- 遺伝子の複製と喪失の出来事の制約と結果を調査する.
主な方法:
- 遺伝子の進化史を再構築するための計算手順を開発した.
- この手順を17のキノコのゲノムに適用しました.
- オルソログとパラログを識別するために,遺伝子ツリーの包括的なカタログを生成しました.
主要な成果:
- 遺伝子の複製と喪失は,遺伝子の機能と相互作用ネットワークによって制限されます.
- ストレスに関連する遺伝子は,重複と損失の高い割合を示しますが,成長に関連する遺伝子は保存されます.
- 複製された遺伝子は,主に生物化学的機能ではなく,規制制御によって異なる.
- 全ゲノム複製は制約を回避し,機能範囲を拡大し,ネットワークモジュール化につながる.
結論:
- 遺伝子の複製と喪失はランダムではなく,機能的およびネットワーク特性によって形成されます.
- 生物化学的相違ではなく,規制的相違が重複遺伝子の主要な運命である.
- 遺伝子の複製は,特化を通して細胞システムのモジュール化に貢献します.
関連する概念動画
Gene Duplication and Divergence
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
Gene Families
Gene families consist of groups of genes proposed to have originated from a common ancestor. Typically these arise through events in which a gene or genes are mistakenly duplicated during cell division. Unlike their parent genes (which are subject to selection pressure to maintain function), these gene copies do not need to preserve their sequences and may evolve at a relatively faster rate.
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...
Genome Size and the Evolution of New Genes
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
Genome Size and the Evolution of New Genes
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
Overview of Fungi
Fungi are a diverse group of eukaryotes more closely related to animals than other eukaryotes. Fungal cell walls comprise chitin, a polysaccharide that provides structural strength, and glucans, which contribute to flexibility and integrity. Other polysaccharides, such as mannans and galactosans, may supplement or replace chitin in some fungi. These adaptations, along with their preference for acidic environments and tolerance for high osmotic pressure, enable fungi to thrive in various...
Exon Recombination
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Exon shuffling follows “splice frame rules.” Each exon has three reading...

