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関連する概念動画

¹H NMR of Conformationally Flexible Molecules: Temporal Resolution00:52

¹H NMR of Conformationally Flexible Molecules: Temporal Resolution

At room temperature, the chair conformer of cyclohexane undergoes rapid ring flipping between two equivalent chair conformers at a rate of approximately 105 times per second. These two chair conformers are in equilibrium. The rapid ring flipping results in the interconversion of the axial proton to an equatorial proton and an equatorial to the axial proton. Such interconversions are too rapid and cannot be detected on the NMR timescale. Hence, the NMR spectrometer cannot distinguish between the...
¹H NMR: Interpreting Distorted and Overlapping Signals01:02

¹H NMR: Interpreting Distorted and Overlapping Signals

Spin systems where the difference in chemical shifts of the coupled nuclei is greater than ten times J are called first-order spin systems. These nuclei are weakly coupled, and their chemical shifts and coupling constant can generally be estimated from the well-separated signals in the spectrum.
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are slanted or...
NMR Spectrometers: Resolution and Error Correction01:14

NMR Spectrometers: Resolution and Error Correction

When magnetic nuclei in a sample achieve resonance and undergo relaxation, the signal detected in NMR is an approximately exponential free induction decay. Fourier transform of an exponential decay yields a Lorentzian peak in the frequency domain. Lorentzian peaks in an NMR spectrum are defined by their amplitude, full width at half maximum, and position, where the peak width is governed by the spin-spin relaxation time alone. In real experiments, however, the applied magnetic field is rendered...
Atomic Nuclei: Magnetic Resonance01:05

Atomic Nuclei: Magnetic Resonance

The number of nuclear spins aligned in the lower energy state is slightly greater than those in the higher energy state. In the presence of an external magnetic field, as the spins precess at the Larmor frequency, the excess population results in a net magnetization oriented along the z axis. When a pulse or a short burst of radio waves at the Larmor frequency is applied along the x axis, the coupling of frequencies causes resonance and flips the nuclear spins of the excess population from the...
¹H NMR: Complex Splitting01:13

¹H NMR: Complex Splitting

A proton M that is coupled to a proton X results in doublet signals for M. However, NMR-active nuclei can be simultaneously coupled to more than one nonequivalent nucleus. When M is coupled to a second proton A, such as in styrene oxide, each peak in the doublet is split into another doublet.
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied first.
Interpreting ¹H NMR Signal Splitting: The (n + 1) Rule01:10

Interpreting ¹H NMR Signal Splitting: The (n + 1) Rule

In the AX proton spin system, proton A can sense the two spin states of a coupled proton X, resulting in a doublet NMR signal with two peaks of equal (1:1) intensity. When proton A is coupled to two equivalent protons (AX2 spin system), the spin states of each X can be aligned with or against the external field, creating three possible scenarios. This results in a 1:2:1  triplet signal, where the central peak corresponds to the chemical shift of A and is twice as large or intense as the others.

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関連する実験動画

Updated: Jul 10, 2026

Line Shape Analysis of Dynamic NMR Spectra for Characterizing Coordination Sphere Rearrangements at a Chiral Rhenium Polyhydride Complex
10:52

Line Shape Analysis of Dynamic NMR Spectra for Characterizing Coordination Sphere Rearrangements at a Chiral Rhenium Polyhydride Complex

Published on: July 27, 2022

シミュレートスケーリング法による電子パラマグネティック共振スピンラベルの構成をマッピングする.

Mikolai I Fajer1, Hongzhi Li, Wei Yang

  • 1Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida 32306, USA.

Journal of the American Chemical Society
|October 24, 2007
PubMed
まとめ

私たちは,効率的なタンパク質スピンラベルシミュレーションのための新しいシミュレーションスケーリングアプローチを開発しました. この方法は,スピンラベルの振る舞いを正確に予測し,タンパク質の構成とダイナミクスに関するEPR測定の解釈を助けます.

さらに関連する動画

Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR
14:44

Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR

Published on: December 16, 2013

Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy
14:55

Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy

Published on: September 17, 2017

関連する実験動画

Last Updated: Jul 10, 2026

Line Shape Analysis of Dynamic NMR Spectra for Characterizing Coordination Sphere Rearrangements at a Chiral Rhenium Polyhydride Complex
10:52

Line Shape Analysis of Dynamic NMR Spectra for Characterizing Coordination Sphere Rearrangements at a Chiral Rhenium Polyhydride Complex

Published on: July 27, 2022

Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR
14:44

Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR

Published on: December 16, 2013

Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy
14:55

Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy

Published on: September 17, 2017

科学分野:

  • 計算化学はコンピュータ化学である.
  • バイオフィジックス 生物物理学
  • 分子モデリング

背景:

  • スピンラベルの振る舞いをシミュレートすることは,タンパク質のダイナミクスを理解するために不可欠です.
  • 信頼性の高い分子モデリングには,正確な構成サンプル採取が不可欠です.

研究 の 目的:

  • タンパク質の背骨に付着したスピンラベルの行動をシミュレートするための効率的な計算アプローチを開発する.
  • 分子ダイナミクスの精度向上のためにローカルコンフォーマーションサンプリングを強化する.
  • 実験データに対する方法の検証と,EPR測定の解釈におけるその応用を探求する.

主な方法:

  • シミュレート・スケーリング (SS) アプローチを開発し,潜在的なスケーリングパラメータのランダムウォークをハイブリッド・モンテカルロ・フレームワーク内の分子動力学と結合した.
  • この方法は,正確な相対自由エネルギー計算のための熱力学的詳細バランスを保持します.
  • スピンラベル付T4ライソ酵素のX線結晶構造を用いてアプローチを検証した.

主要な成果:

  • SSのアプローチは,形状の間の効率的な障壁の横断を可能にし,サンプリングを強化します.
  • スピンラベルのトルション角度に対する平均力 (PMF) のポテンシャルは,様々なタンパク質環境 (表面,半埋葬,埋葬) において一貫していました.
  • 暗黙の溶剤モデルは,明示的な溶剤処理と優れた一致を示し,計算効率を提供しました.

結論:

  • 開発されたSSアプローチは,スピンラベルの動作を正確にシミュレートし,タンパク質の構成と動態に関する洞察を提供します.
  • この方法は,さまざまなタンパク質環境において有効であり,電子パラマグネティック共鳴 (EPR) データの解釈をサポートします.
  • 暗黙の溶媒モデルは,スピンラベルモデリングの計算的に実行可能な代替案です.