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Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
Published on: May 7, 2010
ヒト染色体の領域組織は,核膜の相互作用のマッピングによって明らかになりました
Lars Guelen1, Ludo Pagie, Emilie Brasset
1Division of Molecular Biology, Netherlands Cancer Institute, Plesmanlaan 121, Amsterdam, The Netherlands.
Nature
|May 9, 2008
まとめ
科学者たちは,ヒトゲノムと核ラミナ (NL) の相互作用をマッピングし,1,300以上のラミナ関連ドメイン (LAD) を明らかにした. これらの大きなゲノム領域は,抑制された遺伝子発現と組織化された染色体構造と関連しています.
科学分野:
- ゲノミクスゲノミクスとは
- エピジェネティクス エピジェネティクス
- 細胞生物学 細胞生物学
背景:
- インターフェーズ核におけるヒト染色体構造は,まだ十分に理解されていない.
- 特定の染色体領域が核膜 (NL) に近いことが,潜在的なゲノム結合を示唆している.
- NLと相互作用する in vivo 配列を特定することは,核組織を理解するために極めて重要です.
研究 の 目的:
- ヒト細胞の核膜成分とのゲノム全体の相互作用の高解像度マップを作成する.
- in vivoでNLと結合する特定のゲノム配列を特定する.
- 染色体の空間的組織におけるNL相互作用の役割を明らかにする.
主な方法:
- 核ラミナ成分との相互作用の高解像度ゲノム全体のマッピング.
- 人間の線維芽細胞の分析.
- ラミナ関連ドメイン (LAD) の識別と特徴付け.
主要な成果:
- 0.1~10メガベースからなる1,300以上のディスクリートなラミナ関連ドメイン (LAD) の発見.
- LADは低遺伝子発現によって特徴付けられ,抑圧的な染色体環境を示しています.
- LADの境界は,CTCFの絶縁タンパク質,LADから遠ざかるプロモーター,またはCpGの島によって定義されます.
結論:
- 人間のゲノムは,核のラミナと相互作用する大きく,明確な領域に編成されています.
- ラミナ関連ドメイン (LAD) は,核内の染色体組織の基本単位を表しています.
- これらの発見は,染色体組織と遺伝子調節のメカニズムについての洞察を提供します.
関連する概念動画
Karyotyping
Overview
Chromatin Packaging
Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter?
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order structures.
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order structures.
Lampbrush Chromosomes
In 1882, Flemming observed lampbrush chromosomes (LBC) in salamander eggs. Later in 1892, Rückert observed LBCs in shark egg cells and coined the term "lampbrush chromosomes" because they looked like brushes used to clean kerosene lamps.
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops resemble the...
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops resemble the...
Heterochromatin
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at 9th...
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at 9th...
Chromatin Packaging
Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...
Nucleoid
The nucleoid represents a structurally and functionally distinct region within prokaryotic cells, where the cell's DNA and associated proteins are housed. Unlike eukaryotic cells, prokaryotes lack a membrane-bound nucleus, and the nucleoid facilitates the organization and accessibility of the genetic material within this constraint. The DNA in most bacteria and archaea exists as a single, circular, double-stranded molecule that is highly compacted through supercoiling and interactions with...

