関連する実験動画
Updated: Jun 22, 2026

07:44
High-throughput Purification of Affinity-tagged Recombinant Proteins
Published on: August 26, 2012
転写の構造的基礎: 3.4 アングストームの解像度で逆行RNAポリメラーゼII
Dong Wang1, David A Bushnell, Xuhui Huang
1Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
まとめ
研究者らは,RNAポリメラーゼIIの逆行状態の結晶構造を決定し,校正とRNA分裂に不可欠な特定の結合部位を明らかにした. この発見は,転写の忠誠性についての理解を深める.
科学分野:
- 分子生物学は分子生物学である.
- 構造生物学 構造生物学とは
- バイオケミストリー バイオケミストリー
背景:
- RNAポリメラーゼ (RNAP) は,DNAをRNAに転写する必須酵素である.
- RNAPは,トランスクリプション中に複数のコンフォーマーション状態を動的にサイクルします.
- 以前の構造研究は,RNAPsの転位前と転位後の状態を明らかにした.
研究 の 目的:
- 逆転転位状態のRNAポリメラーゼIIの結晶構造を決定する.
- ニュクレオチド結合部位を含む,逆行状態の構造的特徴を特徴づける.
- 延伸因子SII (TFIIS) が,バックトラッキング状態でのRNA分裂を促進する役割を調査する.
主な方法:
- X線結晶学を用いて,RNAポリメラーゼIIの構造を決定した.
- 逆行状態でのRNAポリメラーゼIIの結晶化が達成されました.
- 分裂準備の複合体を捕獲するために,延長因子TFIISとの共結晶化が行われました.
主要な成果:
- 逆行状態のRNAポリメラーゼIIの結晶構造が成功裏に決定されました.
- "P"サイトと呼ばれる特定のヌクレオチド結合部位は,逆行構造の中で特定されました.
- 構造は,TFIIS結合時に再編成され,RNAを分裂のために位置づけることを明らかにしました.
結論:
- RNAポリメラーゼIIの逆行状態は,誤って組み込まれた核酸または損傷したDNAを結合するためのユニークなP部位を持っています.
- このPサイトは,転写の校正メカニズムに不可欠です.
- TFIISに結合した構造は,RNA分裂のメカニズムに関する洞察を提供し,転写の忠実性を高めます.
関連する概念動画
Transcription Initiation
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...
Eukaryotic RNA Polymerases
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
All three eukaryotic RNAPs require specific transcription factors, of which the...
Eukaryotic RNA Polymerases
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
All three eukaryotic RNAPs require specific transcription factors, of which the...
Bacterial Transcription
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
RNA Polymerase II Accessory Proteins
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
RNA Polymerase II Accessory Proteins
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...

