32個のプロリン残基を非正規のアミノ酸に置き換えると,高度に活性なDNAポリメラーゼが生じる
Bastian Holzberger1, Andreas Marx
1Department of Chemistry and Konstanz Research School Chemical Biology, University of Konstanz, Universitätsstraβe 10, 78457 Konstanz, Germany.
Journal of the American Chemical Society
|October 22, 2010
まとめ
タンパク質工学では,非正規のアミノ酸をDNAポリメラーゼに成功裏に組み込みました. この多化酵素は重要な機能を保持し,将来のタンパク質工学アプリケーションの有望性を示しました.
科学分野:
- バイオケミストリー バイオケミストリー
- 分子生物学は分子生物学である.
- プロテイン工学は,タンパク質の
背景:
- プロテイン工学は,伝統的に20の天然アミノ酸を使用しています.
- 非正規のアミノ酸は,タンパク質の設計に新しい機能性を提供します.
- DNAポリメラーゼは,DNA合成に不可欠な動的酵素である.
研究 の 目的:
- 非正規のアミノ酸を用いて多化DNAポリメラーゼを生成する.
- 非正規のアミノ酸置換が酵素の活性,選択性,安定性に与える影響を評価する.
- 高度にダイナミックな酵素のエンジニアリングにおける非正規のアミノ酸の可能性を調査する.
主な方法:
- KlenTaq DNAポリメラーゼで32個のプロリン残基を (4R) - フロロプロリンで全体的に置き換えること.
- プライマー拡張とPCRアッセイを用いた酵素活性調査.
- 酸化酵素を親の野生型酵素と比較した.
主要な成果:
- プロリン残基を (4R) - フロロロプロリンで効率的に (92%) 置き換えた.
- その結果生じた酸化DNAポリメラーゼは,高い活性を示し,忠誠性と感受性を保持した.
- 酵素は,野生のタイプと比較して,熱安定性がわずかに低下したことを示した.
結論:
- 非正規のアミノ酸の置換は,重要な性質を損なうことなく,大きく,ダイナミックな酵素で実現可能である.
- 酸化DNAポリメラーゼは,さらなるタンパク質工学のための貴重なツールと出発点として機能します.
- この研究は,非正規のアミノ酸の有用性を実証することによって,タンパク質工学のツールキットを拡張します.
さらに関連する動画
11:47Residue-specific Incorporation of Noncanonical Amino Acids into Model Proteins Using an Escherichia coli Cell-free Transcription-translation System
Published on: August 1, 2016
07:38DNA Polymerase Activity Assay Using Near-infrared Fluorescent Labeled DNA Visualized by Acrylamide Gel Electrophoresis
Published on: October 6, 2017
関連する概念動画
Proofreading
Synthesis of new DNA molecules is carried out by the enzyme DNA polymerase, which adds nucleotides on the daughter strand complementary to the template DNA strand. DNA polymerase has a higher affinity to add the correct base and ensures fidelity during DNA replication. Furthermore, it exhibits proofreading activity during replication, using an exonuclease domain that cuts off incorrect nucleotides from the nascent DNA strand.
Errors During Replication are Corrected by the DNA Polymerase Enzyme
Errors During Replication are Corrected by the DNA Polymerase Enzyme
Proofreading
Synthesis of new DNA molecules starts when DNA polymerase links nucleotides together in a sequence that is complementary to the template DNA strand. DNA polymerase has a higher affinity for the correct base to ensure fidelity in DNA replication. The DNA polymerase furthermore proofreads during replication, using an exonuclease domain that cuts off incorrect nucleotides from the nascent DNA strand.Errors during Replication Are Corrected by the DNA Polymerase EnzymeGenomic DNA is synthesized in...
Translesion DNA Polymerases
Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
The Replisome
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The Replisome
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
Restarting Stalled Replication Forks
DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...
