リモートトーホールド:DNAハイブリッド化運動の柔軟な制御のためのメカニズム
Anthony J Genot1, David Yu Zhang, Jonathan Bath
1Department of Physics, Clarendon Laboratory, University of Oxford, Parks Road, Oxford OX1 3PU, United Kingdom.
Journal of the American Chemical Society
|January 28, 2011
まとめ
研究者は,分子装置のDNAハイブリッド化率を制御できるようになりました. DNA鎖にスペーサーを挿入することで,反応速度を正確に調整することができ,新しいデバイスの機能を可能にします.
科学分野:
- 分子生物学は分子生物学である.
- ナノテクノロジー ナノテクノロジー
- バイオフィジックス 生物物理学
背景:
- DNAのハイブリッド化は,分子装置の構築に不可欠です.
- デバイスの機能には,DNAハイブリッド化運動を制御することが不可欠です.
- 牽引媒介の鎖移位は,DNAのハイブリッド化に対するプログラム可能な制御を提供します.
研究 の 目的:
- DNAのハイブリッド化運動を制御するための新しい方法を調査する.
- 足場と移動領域の間のスペースを挿入することの影響を調査する.
- 分子デバイスのアプリケーションのストランド移位率の正確な制御を達成するために.
主な方法:
- DNA鎖の異位動力学に対するスペーサー挿入の効果を調査した.
- 反応速度に影響を与えるために調節されたスペーサーの長さと性質.
- 運動校正と濃度-堅固なレジームを達成するために,スペースメディエート制御を適用します.
主要な成果:
- スペーサーの挿入は,ハイブリダイゼーション運動のための追加の制御メカニズムを提供します.
- スパッサー・モジュレーションにより,少なくとも3桁の大きさでストランド移動速度を制御できます.
- このメカニズムの応用を,運動校正と濃度-堅固な異位反応で実証した.
結論:
- スパイサー・エンジニアリングは,DNAのハイブリッド化運動を微調整するための強力な戦略を提供します.
- このアプローチは,DNAベースの分子デバイスのプログラミング性と機能性を高めます.
- この発見により,高度な応用のために,DNAデバイスを特定の運動状態で動作させることができます.
関連する概念動画
Conservative Site-specific Recombination and Phase Variation
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
Homologous Recombination
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
Translesion DNA Polymerases
Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
FISH - Fluorescent In-situ Hybridization
Fluorescence in situ hybridization, or FISH, was developed in the early 1980s and has quickly become one of the most widely used techniques in cytogenetics. Labeled probes are used to bind complementary DNA or RNA sequences on a chromosome or in a region within a cell. Earlier, the probes could only be obtained by cloning or reverse transcription of a DNA template. Currently, the probe oligonucleotides can be synthesized synthetically. Additionally, with the advancement of optical techniques,...
The DNA Replication Fork
An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork. Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication forks, one in...


