ニューラルネットワークの計算は,DNA鎖の移転カスケードによるものです
Lulu Qian1, Erik Winfree, Jehoshua Bruck
1Bioengineering, California Institute of Technology, Pasadena, California 91125, USA.
Nature
|July 22, 2011
まとめ
研究者は,DNA鎖の移転カスケードを使用して,人工ニューラルネットワークを作成しました. これらの分子システムは,パターン認識とメモリリコールを含む脳のような機能を遂行し,インテリジェントな化学システムへの道を開くことができます.
科学分野:
- バイオ分子コンピューティング
- 人工知能 (AI) は,人工知能 (AI) を利用する.
- 合成生物学 合成生物学とは
背景:
- 哺乳類の脳機能は,人工知能 (AI) システムにインスピレーションを与えています.
- 初期の細胞の生存は複雑な生物分子回路に依存していたが,その計算能力は未十分に研究されている.
- 既存の人工化学システムには,多様な計算モデルとアプリケーションが欠けている.
研究 の 目的:
- 分子系が,脳のような自律的な行動を示すことができるということを示すために.
- DNAコンピューティングと鎖移位回路を使用して人工ニューラルネットワークを開発する.
- 機能的なホップフィールド関連記憶を分子レベルで実装する.
主な方法:
- 拡張可能で多層のデジタル回路のためのDNAゲートアーキテクチャを使用しました.
- 線形値回路 (人工ニューラルネットワークモデル) をDNA鎖の移位カスケードに変換した.
- DNA鎖の移位を用いた4つのニューロンのホップフィールド関連記憶を実装しました.
主要な成果:
- DNA鎖の移転カスケードから小さなニューラルネットワークを成功裏に作成しました.
- 自律的な脳のような行動を示す分子システムを実証した.
- 不完全な入力から訓練されたDNAパターンを想起するホップフィールド関連記憶を開発しました.
結論:
- DNA鎖の移転カスケードは,神経ネットワークとして機能するように設計することができます.
- このアプローチにより,自律的な化学システムが分子パターンを認識し,意思決定を行うことができます.
- 分子コンピューティングは,脳のような能力を持つインテリジェントな化学システムの新しいパラダイムを提供します.
関連する概念動画
Lagging Strand Synthesis
During replication, the complementary strands in double-stranded DNA are synthesized at different rates. Replication first begins on the leading strand. Replication starts later, occurs more slowly, and proceeds discontinuously on the lagging strand.
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
Lagging Strand Synthesis
During replication, the complementary strands in double-stranded DNA are synthesized at different rates. Replication first begins on the leading strand. Replication starts later, occurs more slowly, and proceeds discontinuously on the lagging strand.
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
Next-generation Sequencing
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.
Restarting Stalled Replication Forks
DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...
The DNA Replication Fork
An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork. Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication forks, one in...
The Replisome
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...


