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関連する概念動画

Enzymes02:34

Enzymes

Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
Introduction to Mechanisms of Enzyme Catalysis01:13

Introduction to Mechanisms of Enzyme Catalysis

For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes a mild...
Introduction to Mechanisms of Enzyme Catalysis01:13

Introduction to Mechanisms of Enzyme Catalysis

For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes a mild...
Introduction to Enzymes01:22

Introduction to Enzymes

The use of enzymes by humans dates to 7000 BCE. Humans first used enzymes to ferment sugars and produce alcohol without knowing that this was an enzyme-catalyzed reaction. Wilhelm Kuhne coined the term 'enzyme' in 1877 from the Greek words ‘en’ meaning ‘in’ or ‘within’ and ‘zyme’ meaning ‘yeast.’
Most enzymes are proteins that speed up biochemical reactions without being consumed. Enzymes contain one or more active sites that bind the substrates and convert them into products. Many enzymes also...
Introduction To Enzymes01:22

Introduction To Enzymes

The use of enzymes by humans dates to 7000 BCE. Humans first used enzymes to ferment sugars and produce alcohol without knowing that this was an enzyme-catalyzed reaction. Wilhelm Kuhne coined the term 'enzyme' in 1877 from the Greek words ‘en’ meaning ‘in’ or ‘within’ and ‘zyme’ meaning ‘yeast.’
Most enzymes are proteins that speed up biochemical reactions without being consumed. Enzymes contain one or more active sites that bind the substrates and convert them into products. Many enzymes also...
Catalytically Perfect Enzymes01:07

Catalytically Perfect Enzymes

The theory of catalytically perfect enzymes was first proposed by W.J. Albery and J. R. Knowles in 1976. These enzymes catalyze biochemical reactions at high-speed. Their catalytic efficiency values range from 108-109 M-1s-1. These enzymes are also called 'diffusion-controlled' as the only rate-limiting step in the catalysis is that of the substrate diffusion into the active site. Examples include triose phosphate isomerase, fumarase, and superoxide dismutase.

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関連する実験動画

Updated: May 21, 2026

Hot Biological Catalysis: Isothermal Titration Calorimetry to Characterize Enzymatic Reactions
13:00

Hot Biological Catalysis: Isothermal Titration Calorimetry to Characterize Enzymatic Reactions

Published on: April 4, 2014

幅広く開いたフラップは,尿素酵素の活性化の鍵です.

Benjamin P Roberts1, Bill R Miller, Adrian E Roitberg

  • 1Quantum Theory Project, University of Florida, P.O. Box 118435, Gainesville, Florida 32611-8435, USA.

Journal of the American Chemical Society
|June 8, 2012
PubMed
まとめ

研究者らは,ウレアゼ酵素のフラップの新しい,広く開かれた状態を発見しました. この発見により,活性部位の詳細が明らかになり,尿素酵素を標的とした薬剤発見の新たな可能性が生まれました.

科学分野:

  • バイオケミストリー バイオケミストリー
  • 酵素学 酵素学とは
  • 構造生物学 構造生物学とは

背景:

  • 尿素酵素の活動は,基質と製品の動きを制御する活性部位のフラップによって調節されます.
  • 尿素酵素の構成動態を理解することは,酵素阻害と薬剤開発に不可欠です.

研究 の 目的:

  • 分子動力学シミュレーションを使用して,尿素酸活性部位のフラップの構成状態を調査する.
  • 薬剤発見のために利用できる尿素活性部位のフラップの新しい状態を特定するために.

主な方法:

  • 分子動力学 (MD) のシミュレーションを用いて,尿素酸活性部位のフラップの構造的な風景を調査した.
  • 異なるフラップ状態とその関連するエネルギー障壁を特定するために,シミュレーション軌道を分析しました.

主要な成果:

  • 既知の閉ざされた状態と開いた状態とは異なる,これまで観察されなかった,広く開いたフラップ状態の尿素酸を特定しました.
  • 広く開いた状態は,尿素酵素活性部位の金属クラスターに即座にアクセスできることを実証しました.
  • フラップが閉ざされた場合でも,結合ポケット内の溶媒にさらされた領域が観察され,潜在的基板/製品貯蔵庫が示唆されています.

結論:

さらに関連する動画

Determination of Microbial Extracellular Enzyme Activity in Waters, Soils, and Sediments using High Throughput Microplate Assays
15:23

Determination of Microbial Extracellular Enzyme Activity in Waters, Soils, and Sediments using High Throughput Microplate Assays

Published on: October 1, 2013

Thermodynamics of Membrane Protein Folding Measured by Fluorescence Spectroscopy
10:09

Thermodynamics of Membrane Protein Folding Measured by Fluorescence Spectroscopy

Published on: April 28, 2011

関連する実験動画

Last Updated: May 21, 2026

Hot Biological Catalysis: Isothermal Titration Calorimetry to Characterize Enzymatic Reactions
13:00

Hot Biological Catalysis: Isothermal Titration Calorimetry to Characterize Enzymatic Reactions

Published on: April 4, 2014

Determination of Microbial Extracellular Enzyme Activity in Waters, Soils, and Sediments using High Throughput Microplate Assays
15:23

Determination of Microbial Extracellular Enzyme Activity in Waters, Soils, and Sediments using High Throughput Microplate Assays

Published on: October 1, 2013

Thermodynamics of Membrane Protein Folding Measured by Fluorescence Spectroscopy
10:09

Thermodynamics of Membrane Protein Folding Measured by Fluorescence Spectroscopy

Published on: April 28, 2011

  • 新たに特定された幅広く開いたフラップ状態は,ユーレアゼのアクセス可能なアクティブサイトポケットを大幅に拡張します.
  • この拡張されたポケットは,小分子阻害剤と尿素酶を標的とする薬物の設計のための新しい機会を提供します.
  • 潜在的基板/産物貯蔵庫は,酵素機能におけるその役割に関するさらなる調査を正当化します.