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Structure of Amines01:19

Structure of Amines

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The hybridized nitrogen atom in amines possesses a lone pair of electrons and is bound to three substituents with a bond angle of around 108°, which is less than the tetrahedral angle of 109.5°. However, the C–N–H bond angle is slightly larger at 112°, with a carbon–nitrogen bond length of 147 pm. This carbon–nitrogen bond length of of amines is longer than the carbon–oxygen bond of alcohols (143 pm) but shorter than alkanes’...
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Inorganic Nitrogen Assimilation01:22

Inorganic Nitrogen Assimilation

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Nitrogen is an essential element in biological systems, forming a crucial component of proteins, nucleic acids, and other cellular constituents. Many bacteria and archaea acquire nitrogen in the form of nitrate (NO₃⁻) or ammonia (NH₃), which are then assimilated into biomolecules through specific enzymatic pathways.Assimilatory Nitrate ReductionWhen nitrate enters the cell, it undergoes a two-step reduction process known as assimilatory nitrate reduction. Initially, the enzyme...
894
DNA Base Pairing02:27

DNA Base Pairing

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Erwin Chargaff’s rules on DNA equivalence paved the way for the discovery of base pairing in DNA. Chargaff’s rules state that in a double-stranded DNA molecule,
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DNA Base Pairing02:27

DNA Base Pairing

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Nucleic Acid Structure01:25

Nucleic Acid Structure

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The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
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Nucleoid01:24

Nucleoid

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The nucleoid represents a structurally and functionally distinct region within prokaryotic cells, where the cell's DNA and associated proteins are housed. Unlike eukaryotic cells, prokaryotes lack a membrane-bound nucleus, and the nucleoid facilitates the organization and accessibility of the genetic material within this constraint. The DNA in most bacteria and archaea exists as a single, circular, double-stranded molecule that is highly compacted through supercoiling and interactions with...
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関連する実験動画

Updated: Apr 19, 2026

Analyzing Protein Architectures and Protein-Ligand Complexes by Integrative Structural Mass Spectrometry
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Analyzing Protein Architectures and Protein-Ligand Complexes by Integrative Structural Mass Spectrometry

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窒素アゼにおける非対称な核酸相互作用の構造的証拠

F Akif Tezcan1, Jens T Kaiser, James B Howard

  • 1Department of Chemistry and Biochemistry, University of California, San Diego , La Jolla, California 92093-0356, United States.

Journal of the American Chemical Society
|December 19, 2014
PubMed
まとめ

新しい窒素酶構造は非対称な核酸結合を明らかにし,ATPの水解が段階的に発生することを示唆しています. このメカニズムは,窒素固定のための電子の移転を制御することができます.

科学分野:

  • バイオケミストリー バイオケミストリー
  • 構造生物学 構造生物学とは
  • 酵素学 酵素学とは

背景:

  • 窒素酵素複合体は,必須の窒素固定を触媒化する.
  • アデノシン三リン酸 (ATP) の水解が電子移転 (ET) 反応における正確な役割は完全に理解されていません.

研究 の 目的:

  • 窒素酶の触媒サイクルにおけるATP水解のメカニズムを解明する.
  • ヌクレオチド結合の構造的基礎と酵素機能への影響について調査する.

主な方法:

  • 窒素酶複合体の結晶化とMgADPとMgAMPPCP (ATPのアナログ).
  • 複合体の高解像度構造を決定するX線結晶学.

主要な成果:

  • 窒素酶複合体の新しい構造が決定され,Fe-タンパク質サブユニットに2つのヌクレオチド (MgADPとMgAMPPCP) の非対称な結合が示されました.
  • これらのヌクレオチドは,2つの異なるMoFeタンパク質サブユニットと関連しており,非対称な相互作用を示しています.

結論:

  • 非対称な核酸結合は,ATPの水解とリン酸の放出のための段階的なメカニズムを示唆しています.

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  • この段階的なプロセスとFe-タンパク質の構成の変化は,Fe-タンパク質-MoFe-タンパク質複合体の寿命を延ばす可能性がある.
  • この長期間の相互作用は,窒素固定の基板減少に不可欠な連続的な複合体内電子移転をオーケストラ化することがあります.