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Contact-dependent Signaling01:19

Contact-dependent Signaling

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Contact-dependent signaling, as the name suggests, requires that communicating cells be in direct contact with each other. This is achieved either through receptor-ligand interactions or by specialized cytoplasmic channels that allow the flow of small molecules between cells. In animal cells, channels called gap junctions facilitate contact-dependent signaling in certain tissues, whereas, plasmodesmata perform a similar function in plants.
Gap Junctions
In animal cells, gap junctions are formed...
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P-N junction01:11

P-N junction

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A p-n junction is formed when p-type and n-type semiconductor materials are joined together. At the interface of the p-n junction, holes from the p-side and electrons from the n-side begin to diffuse into the opposite sides due to the concentration gradient. This diffusion of carriers leads to a region around the junction where there are no free charge carriers, known as the depletion region. The charge density within the depletion region for the n-side and p-side can be described by the...
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Gene Conversion02:08

Gene Conversion

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Other than maintaining genome stability via DNA repair, homologous recombination plays an important role in diversifying the genome. In fact, the recombination of sequences forms the molecular basis of genomic evolution. Random and non-random permutations of genomic sequences create a library of new amalgamated sequences. These newly formed genomes can determine the fitness and survival of cells. In bacteria, homologous and non-homologous types of recombination lead to the evolution of new...
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Single-Strand DNA Binding Proteins01:03

Single-Strand DNA Binding Proteins

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For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
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DNA-only Transposons02:57

DNA-only Transposons

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DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
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Homologous Recombination02:31

Homologous Recombination

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The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
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DNAベースの三方向交差点でのチャージ・トランスポート

Ryan M Young1,2, Arunoday P N Singh1, Arun K Thazhathveetil1

  • 1†Department of Chemistry, Northwestern University, Evanston, Illinois 60208-3113, United States.

Journal of the American Chemical Society
|March 31, 2015
PubMed
まとめ

研究者らは,DNAの三方向結合 (3WJs) の電荷輸送ダイナミクスを調査した. 彼らは,ゲートホール輸送における構成変動が,DNA配列に沿った電子結合に影響することを発見しました.

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Plasmid-derived DNA Strand Displacement Gates for Implementing Chemical Reaction Networks
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Single-Molecule F&#246;rster Resonance Energy Transfer Methods for Real-Time Investigation of the Holliday Junction Resolution by GEN1
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科学分野:

  • 分子生物学は分子生物学である.
  • バイオフィジックス 生物物理学
  • 材料科学 材料科学とは

背景:

  • DNAベースの分子エレクトロニクスには,複雑なアーキテクチャ内の効率的な電荷輸送が必要です.
  • 線形DNAで電荷輸送が実証されているが,三方向結合 (3WJs) などの分岐構造における電荷輸送の行動は不明である.

研究 の 目的:

  • 穴の輸送とDNAの三方向結合の横断のトラッピングのダイナミクスと効率を調査する.
  • 3D DNAアーキテクチャにおける電荷輸送を制御するメカニズムを解明する.

主な方法:

  • 充電キャリアのダイナミクスを探知するために,フェムトセカンドの一時吸収スペクトロスコーピーを用いる.
  • DNAの構成変化と電子結合をモデル化するための分子動力学シミュレーション.

主要な成果:

  • DNA3WJを横断する穴の輸送が観察され,特徴づけられました.
  • DNAの基本状態における構成変動は,電荷輸送を制限する重要な要因として特定されました.

結論:

  • DNA 3WJsにおける電荷輸送は,動的構造変化によって調節される.
  • これらの発見は,分子エレクトロニクスのための複雑なDNA構造における電荷輸送の基本原理の洞察を提供します.