哺乳類のNET-Seqは,RNA処理と結合した全ゲノムにわたる新生トランスクリプションを明らかにした
Takayuki Nojima1, Tomás Gomes2, Ana Rita Fialho Grosso2
1Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK.
Cell
|April 25, 2015
まとめ
私たちは,哺乳類の新生転写を視覚化するためにmNET-seqを開発しました. この技術は,RNAの処理,終結,およびRNAポリメラーゼII CTDのリン酸化が酵母と哺乳類の間にどのように異なっているかについての新しい詳細を明らかにします.
科学分野:
- 分子生物学は分子生物学である.
- 遺伝学 遺伝学とは
- バイオケミストリー バイオケミストリー
背景:
- トランスクリプションは複雑でダイナミックな生物学的プロセスです.
- 新生トランスクリプションの理解は,遺伝子調節の解読に不可欠です.
- 既存の技術は,アクティブトランスクリプションの単核酸解像度を提供することに制限があります.
研究 の 目的:
- 哺乳類の細胞における新生トランスクリプションのプロファイリングのための新しい技術の開発と検証.
- 転写およびRNA処理中のRNAポリメラーゼII (Pol II) のダイナミクスを調査する.
- 哺乳類の転写におけるCTDのリン酸化と終結因子の役割を解明する.
主な方法:
- 哺乳類の染色体 (mNET-seq) のネイティブ延長トランスクリプトシーケンシング技術の開発.
- 新生RNAと関連するPol II.の単核酸分解能プロファイリング.
- スプライソーム活動を含むRNA処理中間物質の分析.
- Pol IIの停止と終了に対する終止因子の枯渇の影響に関する調査.
主要な成果:
- mNET-seqは,新生トランスクリプションの高解像度,ダイナミックなスナップショットを提供します.
- S5P.でリン酸化されたPol II CTDとの関連と5'splice部位の割れ目が検出されました.
- 終止因子がPol IIの停止に影響し,非生産的な転写を制限することを実証しました.
- 酵母と哺乳類の転写の間のCTDリン酸化パターンの有意な違いを明らかにした.
結論:
- mNET-seqは,哺乳類の転写ダイナミクスを研究するための強力なツールです.
- この発見は,転写,RNA処理,および終結の相互作用に関する新しい洞察を提供します.
- 哺乳類の転写は,酵母と比べて,特にCTDのリン酸化に関して,異なる規制メカニズムを示しています.
さらに関連する動画
関連する概念動画
Ribosome Profiling
4.3K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
4.3K
RNA-seq
12.7K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases.
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
12.7K
Chromatin Structure Regulates pre-mRNA Processing
8.5K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
8.5K
Bacterial Transcription
39.6K
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
39.6K
Transcription
160.5K
Overview
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
160.5K
Transcription
36.6K
Transcription is the synthesis of RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in correctly synthesizing messenger RNA (mRNA). Transcriptional regulation is responsible for the differentiation of different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds of RNA Molecules
In eukaryotes,...
Transcription Can Produce Different Kinds of RNA Molecules
In eukaryotes,...
36.6K


