DNA酵素ベースのウォーカーの設計原理:トランスロケーション運動学と光調節
Tae-Gon Cha1, Jing Pan1, Haorong Chen1
1†School of Mechanical Engineering, ‡Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.
Journal of the American Chemical Society
|July 8, 2015
まとめ
この研究は,DNA酵素ウォーカーの速度と動きに影響を与える重要な要因を明らかにしています. これらのパラメータを理解することで,より速く,より制御可能なDNAウォーカーを設計し,将来のアプリケーションを可能にします.
科学分野:
- バイオケミストリー バイオケミストリー
- 分子生物学は分子生物学である.
- ナノテクノロジー ナノテクノロジー
背景:
- DNA酵素ベースのウォーカーは,線路に沿って段階的に移動するために連続した反応を使用します.
- これらのDNAウォーカーを支配する運動学とプロセシビティは完全に理解されていないため,その応用が制限されています.
研究 の 目的:
- DNA酵素ウォーカー運動とプロセシビティに影響を与える主要なパラメータを解明する.
- DNAウォーカー転移の理論モデルを開発する.
- DNAウォーカーの動きの光制御による調節を実証するために.
主な方法:
- DNA酵素の核型,認識腕長,金属イオン濃度に関するメカニズム研究.
- 単一分子運動理論モデルの開発.
- 光同化可能なアゾベンゼン分子の統合,光反応制御.
主要な成果:
- ウォーカーの運動性とプロセシビティに影響を与える重要な設計パラメータを特定しました.
- 約1nm/sで約5μmのウォーカー転位を達成しました.
- 照明制御ヘアピン茎の開口を介して,UV照射下での割裂率の2倍の増加を示しました.
結論:
- 高度にプロセシブで自律的なDNAウォーカーシステムを作成するための設計ガイドラインを提供します.
- DNAウォーカー転位運動の効果的な調節を可能にします.
- 機能的なDNAウォーカー技術の進歩を促進します.
さらに関連する動画
16:21Visualizing Protein-DNA Interactions in Live Bacterial Cells Using Photoactivated Single-molecule Tracking
Published on: March 10, 2014
18.4K
09:58An Optimized Protocol for Electrophoretic Mobility Shift Assay Using Infrared Fluorescent Dye-labeled Oligonucleotides
Published on: November 29, 2016
17.1K
関連する概念動画
DNA-only Transposons
18.6K
DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
The donor site from where the transposon is excised is either degraded or...
18.6K
DNA as a Genetic Template
28.9K
Two structural features of the DNA molecule provide a basis for the mechanisms of heredity: the four nucleotide bases and its double-stranded nature. The Watson-Crick model of double-helical DNA structure, proposed in 1952, drew heavily upon the X-ray crystallography work of researchers Rosalind Franklin and Maurice Wilkins. Watson, Crick, and Wilkins jointly received the Nobel Prize in Physiology or Medicine for their work in 1962. Franklin was, controversially, excluded from the prize for...
28.9K
Conservative Site-specific Recombination and Phase Variation
7.4K
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
7.4K
Protein Dynamics in Living Cells
2.8K
Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
2.8K
DNA Helicases
25.0K
DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
25.0K
