藻類のTET同種によって触媒化されたビタミンC由来DNA変異
Jian-Huang Xue1, Guo-Dong Chen1, Fuhua Hao2
1State Key Laboratory of Molecular Biology, Chinese Academy of Sciences Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China.
Nature
|May 3, 2019
まとめ
科学者は,ビタミンCを用いたTETホモログ酵素 (CMD1) によって触媒化された藻類の新しいDNA変異を発見した.この表遺伝子マークは,クロミドモナス・ラインハーディの光合成の調節とストレス反応に影響する.
科学分野:
- エピジェネティクスとDNA変異
- 分子生物学
- 植物学
背景:
- サイトシンメチル化 (5mC) は多くの生物における重要な表遺伝子マーカーである.
- 10−11 転位 (TET) ダイオキシゲンゼは,哺乳類における5mC酸化とDNA脱メチル化を媒介する.
- 他の真核生物,特にDNA塩基改変におけるTET同類の機能はほとんど不明である.
研究 の 目的:
- 緑の藻類である Chlamydomonas reinhardtiiのTET同類の酵素活性と機能を調査する.
- 新規のDNA変異と,真核の表遺伝子調節におけるその役割を特定する.
- DNAの変異とビタミンCと ストレス反応の関係を探るためだ
主な方法:
- TET同種であるクラミドモナスの5mC変異酵素 (CMD1) を特定した.
- Fe (II) とL-アスコルビック酸 (ビタミンC) を共同基質として必要とするCMD1の触媒活性を特徴づけた.
- 遺伝子解析を用いて野生型とCMD1変異株におけるビタミンC由来DNA変異の存在を分析した.
主要な成果:
- CMD1は,グリセリル分子の5mCへの結合を触媒化し,新しいDNA塩基改変を形成する.
- この変異はビタミンCに依存し,グリオキシル酸とCO2の副産物となる.
- CMD1変異細胞は,光保護遺伝子LHCSR3の超メチル化とダウンレギュレーションにより,高光下での適応性が低下しています.
結論:
- ビタミンCを用いた異なるTETホモログ (CMD1) によって触媒化された新しい真核DNA塩基変異を特定した.
- このビタミンC由来の変異は潜在的表遺伝子マーカーとして作用し,DNAメチル化を抑制する可能性があります.
- CMD1媒介のDNA変異は,クロミドモナス・ラインハーディの光合成とストレス耐性を調節する役割を果たします.
関連する概念動画
Histone Modification
16.0K
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
16.0K
Spreading of Chromatin Modifications
9.4K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
Writers
The writer...
9.4K
Translesion DNA Polymerases
11.1K
Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
11.1K
Vitamins
2.4K
Vitamins, derived from the Latin word for life, are essential organic substances required in small quantities for optimal growth and overall well-being. Unlike other organic nutrients, vitamins don't act as sources of energy or building materials but rather facilitate these nutrients' utilization by the body. Vitamins are predominantly coenzymes, assisting enzymes in specific chemical actions, like the oxidation of glucose for energy involving B vitamins. Most vitamins are not produced...
2.4K
Acid-Catalyzed Ring-Opening of Epoxides
8.8K
Epoxides that are three-membered ring systems are more reactive than other cyclic and acyclic ethers. The high reactivity of epoxides originates from the strain present in the ring. This ring strain acts as a driving force for epoxides to undergo ring-opening reactions either with halogen acids or weak nucleophiles in the presence of mild acid. The acid catalyst converts the epoxide oxygen, a poor leaving group, into an oxonium ion, a better leaving group, making the reaction feasible. The...
8.8K
Base-Catalyzed Ring-Opening of Epoxides
10.1K
Due to their highly strained structures, epoxides can readily undergo ring-opening reactions through nucleophilic substitution, either in the presence of an acid or a base. The nucleophilic substitution reactions in the presence of acid are called acid-catalyzed ring-opening reactions, and nucleophilic substitution reactions in the presence of a base are called base-catalyzed ring-opening reactions. Epoxides undergo base-catalyzed ring-opening reactions in the presence of a strong nucleophile...
10.1K


