2つのホモトープ結合部位を持つ受容体への金属イオン調整に対する反直感的静電学
Vidar Aspelin1, Anna Lidskog2, Carlos Solano Arribas2
1Division of Theoretical Chemistry, Department of Chemistry, Lund University, Lund SE 221 00, Sweden.
Journal of the American Chemical Society
|February 10, 2022
まとめ
この研究は,第2のカリウムイオンがトローガーの bis ((18-crown-6) アナログに第1のイオンより好意的に結合することを明らかにした.
科学分野:
- 超分子化学
- 物理化学
- コンピュータ化学
背景:
- トローガーの塩基 (BCETB) のBis(18-crown-6) アナログは,イオンを結合できる宿主分子である.
- 連続イオン結合の理解は,選択的分子受容体の設計に不可欠である.
- 以前の研究では,このようなシステムにおける連続的なイオン複合化の熱力学的な原動力を完全に解明できませんでした.
研究 の 目的:
- 水溶液中のBCETBへの連続したカリウムイオン結合の熱力学を調査する.
- 観察された結合行動を支配する構造的およびエネルギー的な貢献を探求する.
- 理論的・計算的モデルで実験結果を検証する.
主な方法:
- 結合エンタルピーとアフィニティを測定するために,同熱定位カロミトリー (ITC) が使用された.
- 相互作用をモデル化するために連続体静電理論が使用されました.
- 複製交換分子動力学 (REMD) シミュレーションにより,形状と相互作用に関する原子規模の洞察が得られました.
主要な成果:
- 逆の熱力学的プロファイルが観察された:第2のカリウムイオン結合は,第1よりもエンタルピー的に有利である (ΔHbind,2° < ΔHbind,1°).
- 分子ダイナミクスシミュレーションは実験的傾向を確認し,エンタルピックK + - K + 引き寄せとイオン結合時に崩壊したBCETB構成の確率を増加させた.
- 観察された傾向は,チオシアネートの弱い水分化がエンタルピー差の大きさに影響するにもかかわらず,カウンターイオンとは大きく独立している.
結論:
- 第二のカリウムイオンの強化された結合は,BCETBの崩壊した形状によって促進された有利な分子内相互作用に起因する.
- 結合したカリウムイオン間のエンタルピック吸引は,観測された熱力学的好意性に寄与する.
- この研究は,構造的,静電的,および溶解効果の連続的な宿主-ゲスト複合性の複雑な相互作用に関する基本的な洞察を提供します.
さらに関連する動画
14:44Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR
Published on: December 16, 2013
9.7K
07:54Analysis of AtHIRD11 Intrinsic Disorder and Binding Towards Metal Ions by Capillary Gel Electrophoresis and Affinity Capillary Electrophoresis
Published on: August 22, 2018
6.1K
関連する概念動画
Metal-Ligand Bonds
21.8K
The hemoglobin in the blood, the chlorophyll in green plants, vitamin B-12, and the catalyst used in the manufacture of polyethylene all contain coordination compounds. Ions of the metals, especially the transition metals, are likely to form complexes.
In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...
In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...
21.8K
Complexation Equilibria: The Chelate Effect
717
In complexation reactions, metal atoms or cations interact with ligands to form donor-acceptor adducts called metal complexes. Ligands that bind through one donor site are monodentate, ligands with two donor sites are bidentate, and those with more than two donor sites are polydentate ligands. For example, ethylene diamine is a bidentate ligand that binds through two nitrogen donor atoms, forming a five-membered ring. EDTA is a polydentate ligand that binds through four oxygen and two nitrogen...
717
Ligand Binding Sites
13.9K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
13.9K
Valence Bond Theory
9.8K
Coordination compounds and complexes exhibit different colors, geometries, and magnetic behavior, depending on the metal atom/ion and ligands from which they are composed. In an attempt to explain the bonding and structure of coordination complexes, Linus Pauling proposed the valence bond theory, or VBT, using the concepts of hybridization and the overlapping of the atomic orbitals. According to VBT, the central metal atom or ion (Lewis acid) hybridizes to provide empty orbitals of suitable...
9.8K
Crystal Field Theory - Octahedral Complexes
28.2K
Crystal Field Theory
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
28.2K
Ligand Binding and Linkage
5.0K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
5.0K
