英国の人口における全ゲノム配列化されたがんにおける置換変異シグネチャー
Andrea Degasperi1,2, Xueqing Zou1,2, Tauanne Dias Amarante1,2
1Academic Department of Medical Genetics, School of Clinical Medicine, University of Cambridge, Cambridge CB2 9NB, UK.
まとめ
全ゲノム配列解析 (WGS) によって,新しい癌変異シグネチャーが特定されました. がんは共通と稀な特徴を示し 分析の新たなアプローチを提示します
科学分野:
- ゲノミクス
- 癌 研究
- バイオ情報学
背景:
- 全ゲノムシーケンシング (WGS) は,がんゲノムの詳細な分析を可能にします.
- 変異シグネチャーは 癌のDNA損傷と修復過程を明らかにします
研究 の 目的:
- 大量のがんWGSデータを用いて変異シグネチャー分析を行う.
- 様々な癌の共通と稀な変異のサインを特定し,特徴づけること.
主な方法:
- 英国国立保健局のWGSの12222の腫瘍と正常なマッチングペアの分析.
- ICGCとハートウィッグ財団のWGSがんデータセット (合計18,640) との比較
- シングル・アンド・ダブル・シグネチャーの識別
主要な成果:
- 既知のカタログに40のシングルと18のダブルシグネチャーを追加しました.
- 癌には 限られた共通サインが多く 稀なサインも多く あることが示されました
- 臓器毎の一般的な対稀なサインの分布を特徴づけた.
結論:
- この研究は,既知の癌の変異シグネチャーのレパートリーを拡張します.
- ガンゲノムは 独特の共通サインと 珍しいサインの長い尾によって 特徴付けられています
- 将来の癌ゲノム研究において共通/希少シグネチャー概念を活用するための実用的な枠組みが提案されています.
関連する概念動画
Mutations
39.5K
Mutations are changes in the sequence of DNA. These changes can occur spontaneously or they can be induced by exposure to environmental factors. Mutations can be characterized in a number of different ways: whether and how they alter the amino acid sequence of the protein, whether they occur over a small or large area of DNA, and whether they occur in somatic cells or germline cells.
Chromosomal Alterations Are Large-Scale Mutations
While point mutations are changes in a single nucleotide in...
Chromosomal Alterations Are Large-Scale Mutations
While point mutations are changes in a single nucleotide in...
39.5K
Mismatch Repair
5.1K
Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
5.1K
Single Nucleotide Polymorphisms-SNPs
15.7K
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
15.7K


