関連する実験動画
Updated: Jul 23, 2025

10:58
Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
Published on: July 25, 2013
17.1K
生物学的および設計上のタンパク質の折り畳み安定性のメガスケール実験分析
Kotaro Tsuboyama1,2,3,4, Justas Dauparas5,6, Jonathan Chen1,2,7
1Department of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Nature
|July 19, 2023
まとめ
新しく開発された cDNA ディスプレイ プロテオリシスは タンパク質の折り畳み安定性を数百万もの変異種で測定します これはアミノ酸配列が 安定性をコードし 病気や進化に 影響を及ぼすことを示しています
科学分野:
- 生物化学
- 分子生物学
- コンピュータ生物学
背景:
- タンパク質の構造と配列データは豊富ですが,折りたたみのエネルギーはほとんど不明です.
- タンパク質の折りたたみ熱力学は 病気,進化,タンパク質工学に影響します
- 様々なタンパク質の配列の折り畳みの熱力学を決定するには,新しい方法が必要です.
研究 の 目的:
- タンパク質の折り畳み安定性を測定するためのスケーラブルな方法を開発し,検証する.
- 自然と設計されたタンパク質ドメインの折り畳み安定性の大きなデータセットを作成します.
- 配列,安定性,進化の制約の関係を分析する.
主な方法:
- 熱力学的折り畳み安定性を測定するためにcDNAディスプレイタンパク質解析を用いた.
- 実験では毎週最大900,000のタンパク質ドメインをカバーし 180万の測定結果が得られました
- 単一および二重アミノ酸の変種について,約77万6000の折り畳み安定性のデータセットが策定されました.
主要な成果:
- アミノ酸の適性を影響する環境要因を定量化した.
- タンパク質サイト間の新しい相互作用を含む熱力学的結合を特定した.
- 進化的アミノ酸使用と折り畳みの安定性との間のグローバルな分岐を明らかにした.
- 設計されたタンパク質の安定性決定因子を特定する際の有用性.
結論:
- cDNAディスプレイプロテオリシスは,タンパク質の折り畳み安定性を評価するための迅速で正確でスケーラブルな方法である.
- 生成されたデータセットは,シーケンス・エンコードされた安定性に関する定量的な規則を提供します.
- このアプローチはタンパク質工学を導き,タンパク質の進化と病気の理解を深めることができます.
さらに関連する動画
関連する概念動画
Protein Folding
118.5K
Overview
118.5K
Molecular Chaperones and Protein Folding
18.0K
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
The...
18.0K
Bacterial Protein Maturation
36
Bacterial protein maturation is a tightly regulated process that ensures newly synthesized polypeptides achieve correct functional conformations. This maturation involves a series of modifications, folding events, and quality control steps, often assisted by specialized chaperone proteins.N-Terminal ModificationsThe maturation of bacterial polypeptides begins cotranslationally as the polypeptide exits the ribosome. The first amino acid, N-formylmethionine (fMet), is typically modified at the...
36
Protein Denaturation
4.3K
The function of proteins depends on their native three-dimensional structure, which is dictated by the amino acid sequence of the specific protein. Folding of the polypeptide chain takes place under specific conditions that energetically favor the folded conformation. In contrast, protein denaturation occurs spontaneously under unfavorable conditions that disrupt the integrity of the folded conformation. Thus, the chemical and physical environment of a protein, such as significant changes in pH...
4.3K
Conservation of Protein Domains Over Different Proteins
10.9K
Protein domains are small structurally independent units that are part of a single amino acid chain. Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
10.9K
Protein Organization
6.6K
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence....
The primary structure of a protein is its amino acid sequence....
6.6K

