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Introduction to Enzyme Kinetics01:19

Introduction to Enzyme Kinetics

20.8K
Enzyme kinetics studies the rates of biochemical reactions. Scientists monitor the reaction rates for a particular enzymatic reaction at various substrate concentrations. Additional trials with inhibitors or other molecules that affect the reaction rate may also be performed.
The experimenter can then plot the initial reaction rate or velocity (Vo) of a given trial against the substrate concentration ([S]) to obtain a graph of the reaction properties. For many enzymatic reactions involving a...
20.8K
Enzyme Kinetics01:19

Enzyme Kinetics

98.7K
Enzymes speed up reactions by lowering the activation energy of the reactants. The speed at which the enzyme turns reactants into products is called the rate of reaction. Several factors impact the rate of reaction, including the number of available reactants. Enzyme kinetics is the study of how an enzyme changes the rate of a reaction.
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
98.7K
Introduction to Mechanisms of Enzyme Catalysis01:13

Introduction to Mechanisms of Enzyme Catalysis

8.8K
For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes...
8.8K
Enzymes02:34

Enzymes

82.6K
Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
82.6K
Induced-fit Model01:13

Induced-fit Model

82.1K
Most chemical reactions in cells require enzymes—biological catalysts that speed up the reaction without being consumed or permanently changed. They reduce the activation energy needed to convert the reactants into products. Enzymes are proteins, that usually work by binding to a substrate—a reactant molecule that they act upon.
Enzymes exhibit substrate specificity, meaning that they can only bind to certain substrates. This is mainly determined by the shape and chemical...
82.1K
Ligand Binding and Linkage00:49

Ligand Binding and Linkage

4.9K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.9K

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Updated: Sep 10, 2025

Identification of Kinase-substrate Pairs Using High Throughput Screening
11:13

Identification of Kinase-substrate Pairs Using High Throughput Screening

Published on: August 29, 2015

8.3K

酵素と基板の相互作用に関する構造指向の動力学データセット

Sowmya Ramaswamy Krishnan1, Nishtha Pandey1, Rajgopal Srinivasan1

  • 1TCS Research (Life Sciences division), Tata Consultancy Services, Hyderabad, 500081, India.

Scientific data
|August 26, 2025
PubMed
まとめ

この研究は,酵素運動パラメータ (kcat と Km) を3D構造と関連付けるデータセットであるSKiDを導入します. このリソースは,酵素機能の理解を深め,酵素設計と合成生物学の応用に役立ちます.

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Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
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Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes

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Modeling an Enzyme Active Site using Molecular Visualization Freeware
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Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

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関連する実験動画

Last Updated: Sep 10, 2025

Identification of Kinase-substrate Pairs Using High Throughput Screening
11:13

Identification of Kinase-substrate Pairs Using High Throughput Screening

Published on: August 29, 2015

8.3K
Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
09:42

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes

Published on: January 16, 2016

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Modeling an Enzyme Active Site using Molecular Visualization Freeware
14:37

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

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科学分野:

  • 生物化学
  • 構造生物学
  • バイオ情報学

背景:

  • 酵素は生化学反応を制御する 重要な生物学的触媒です
  • kcatとKmで定義された酵素運動は,効率と特異性を定量化します.
  • 動的パラメータと酵素基板複合の3D構造を結びつけるのにはギャップがある.

研究 の 目的:

  • 3D構造データと酵素運動パラメータ (kcat,Km) を統合したデータセットであるSKiDを作成します.
  • 酵素動力学と構造生物学の ギャップを埋めるために
  • 酵素設計,合成生物学,そして代謝工学の進歩を支援する.

主な方法:

  • 既存のバイオインフォマティクスリソースから統合されたデータ
  • データ処理と計算上の予測のための自動化されたプログラムを使用した.
  • 手動で解決された誤ったデータと保存されたメタデータ
  • 酵素基板複合体の3D座標をUniProtKB識別子で提供した.

主要な成果:

  • 動的パラメータと3D構造を結びつける包括的なデータセットであるSKiDを開発した.
  • 酵素の運動データと構造データを成功裏に統合して整理した.
  • 酵素基板複合体のメタデータと3D座標が含まれています.

結論:

  • SKiDは,酵素機能の構造的基礎を理解するための貴重なリソースを提供します.
  • このデータセットは,酵素設計,合成生物学,代謝工学の研究を促進します.
  • 酵素メカニズムに より深い洞察力を 与えます