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関連する概念動画

Synteny and Evolution02:31

Synteny and Evolution

3.7K
John H. Renwick first coined the term “synteny” in 1971, which refers to the genes present on the same chromosomes, even if they are not genetically linked. The species with common ancestry tend to show conserved syntenic regions. Therefore, the concept of synteny is nowadays used to describe the evolutionary relationship between species.
Around 80 million years ago, the human and mice lineages diverged from the common ancestor. During the course of evolution, the ancestral...
3.7K
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

6.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
6.8K
Modern Molecular Taxonomy01:29

Modern Molecular Taxonomy

541
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
541
Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

4.6K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
4.6K
Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes02:16

Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes

15.0K
The present-day mitochondrial and chloroplast genomes have retained some of the characteristics of their ancestral prokaryotes and also have acquired new attributes during their evolution within eukaryotic cells. Like prokaryotic genomes, mitochondrial and chloroplast genomes neither bind with histone-like proteins nor show complex packaging into chromosome-like structures, as observed in eukaryotes. Unlike mitotic cell divisions observed in eukaryotic cells, mitochondria and chloroplasts...
15.0K
Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

15.2K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
15.2K

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関連する実験動画

Updated: Jan 7, 2026

Mapping Mammalian 3D Genome Interactions with Micro-C-XL
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Mapping Mammalian 3D Genome Interactions with Micro-C-XL

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ntSynt: ミニマイザーグラフマッピングを用いたマルチゲノムシンテニー検出

Lauren Coombe1, Parham Kazemi1, Johnathan Wong1

  • 1Canada's Michael Smith Genome Sciences Centre at BC Cancer, 570 W 7th Ave, Vancouver, BC, V5Z 4S6, Canada.

BMC biology
|December 30, 2025
PubMed
まとめ

ntSyntは、大規模データセット全体にわたるシンテニーを効率的に検出する、新しいマルチ種比較ゲノミクスツールです。アライメントフリーのアプローチを採用し、適度な計算リソースで正確な結果を提供します。

キーワード:
ブルームフィルター比較ゲノミクスミニマイザーマルチゲノム解析シンテニー

さらに関連する動画

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
08:03

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

2.7K
Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis
10:08

Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis

Published on: August 12, 2019

17.6K

関連する実験動画

Last Updated: Jan 7, 2026

Mapping Mammalian 3D Genome Interactions with Micro-C-XL
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Mapping Mammalian 3D Genome Interactions with Micro-C-XL

Published on: November 3, 2023

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Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
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Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

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Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis
10:08

Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis

Published on: August 12, 2019

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科学分野:

  • ゲノミクス; バイオインフォマティクス

背景:

  • ゲノムアセンブリの利用可能性の増加は、スケーラブルな比較ゲノミクスツールの必要性を高めています。
  • シンテニー検出は、マルチ種ゲノム解析に不可欠です。

研究 の 目的:

  • 大規模マルチゲノムシンテニー検出のためのスケーラブルなユーティリティであるntSyntを紹介します。
  • 比較ゲノミクスのための効率的で正確なツールを提供します。

主な方法:

  • アライメントフリーアプローチ。
  • ミニマイザーグラフベースアルゴリズム。
  • 脊椎動物およびミツバチのゲノムでのベンチマーキング。

主要な成果:

  • ntSyntは、シンテニーマッピングにおいて高いゲノムカバレッジ(79-100%)を達成しています。
  • 脊椎動物およびミツバチのゲノムで精度を実証しています。
  • 適度な計算リソース(約2時間、34 GBメモリ)を必要とします。

結論:

  • ntSyntの効率性とスケーラビリティは、広範な比較解析をサポートします。
  • 多様な分類群にわたる大規模ゲノム研究を可能にします。
  • 下流の比較ゲノミクスおよび機能ゲノミクス研究の基盤を提供します。