アルデヒド脱ホルミル化酸素化酵素によるバイオ燃料生産:マルチスケールモデリングを用いたスピン状態、スピンカップリング、ジ鉄補因子の反応性に関する洞察
Thakur Rochak Kumar Rana1, Dinesh Singh2, Rounak Nath3
1Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400 076, India.
Abstract:
Understanding the mechanism of metalloenzymes, particularly multimetallic active sites, remains a significant challenge due to complex spin states, spin coupling, and spin-dependent reactivity. Nevertheless, such systems, exemplified by soluble Methane Monooxygenase (sMMO) and Photosystem II, demonstrate nature's preference for multimetallic centers to perform chemically demanding transformations. Aldehyde-Deformylating Oxygenase (ADO) catalyzes an unusual redox-neutral, O2-dependent conversion of fatty aldehydes into alkanes and formate. Despite its superficial simplicity, the reaction mechanism involves cryptic redox steps, spin-state complexity, and a nonheme {Fe-Fe} diiron center similar to sMMO. Here, we elucidate the mechanism of ADO using multiscale QM/MM modeling combined with spectroscopic calculations. We reveal an unusual μ-peroxo Fe2(III/III) intermediate with asymmetric μ-η1:η2 binding, with antiferromagnetic Fe-Fe coupling that facilitates nucleophilic attack on the aldehyde carbonyl, lowering the activation barrier. An energetics-spectroscopy approach, adapted here, shows excellent agreement, validating the proposed intermediates. The formation of a thermodynamically stable peroxyhemiacetal necessitates the use of external reducing agents for turnover catalysis. Energetic analysis of all plausible metal combinations with Fe and Mn confirms that only the diiron configuration supports efficient catalysis, providing strong theoretical support for the native cofactor. These insights resolve the ADO mechanism and provide design principles for diiron enzymes, advancing biofuel production.
関連する概念動画
Spin–Spin Coupling: One-Bond Coupling
Oxidation of Alkenes: Syn Dihydroxylation with Osmium Tetraoxide
Oxidative Cleavage of Alkenes: Ozonolysis
Ozone is a symmetrical bent molecule stabilized by a resonance structure.
Cooperative Allosteric Transitions
Cooperative Allosteric Transitions
Cooperative Allosteric Transitions

![Protein Film Infrared Electrochemistry Demonstrated for Study of H2 Oxidation by a [NiFe] Hydrogenase](/_next/image?url=https%3A%2F%2Fcloudfront.jove.com%2FCDNSource%2Fteasers%2F55858.jpg&w=3840&q=50)
