非平衡分子鋳型ネットワークにおける熱力学的限界
Benjamin Qureshi1,2, Jenny M Poulton3, Thomas E Ouldridge1,2
1Department of Bioengineering, Imperial College London, London SW7 2AZ, UK.
まとめ
細胞はRNAやタンパク質を作成するために鋳型ネットワークを使用する。最大精度は、情報伝達における熱力学的制約を明らかにする、高フラックスではなく擬似平衡で達成される。
科学分野:
- 生化学
- 熱力学
- システム生物学
背景:
- 細胞は、複雑な反応ネットワークを使用して、正確なRNAおよびタンパク質レベルを維持する。
- 鋳型は、特定の分子生成物の集合を触媒する。
研究 の 目的:
- 細胞鋳型ネットワークにおける情報伝達の熱力学的限界を調査すること。
- これらの非平衡系で精度がどのように達成されるかを理解すること。
主な方法:
- アセンブリ経路における自由エネルギー変化の分析。
- 情報伝達限界のモデリング。
- 擬似平衡および高フラックス領域の比較。
主要な成果:
- 情報伝達は、アセンブリ経路間の自由エネルギー差によって制限される。
- 最大精度は、時間反転軌道と最小エントロピー生成を特徴とする擬似平衡で達成される。
- 高い正味フラックスは、最大の精度には必要ない。
結論:
- 細胞の精度は、運動選択性だけでなく、自由エネルギーランドスケープによって熱力学的に制約される。
- 擬似平衡は、分子集合における高忠実度を達成するための新しいメカニズムを提供する。
関連する概念動画
Cycloaddition Reactions: MO Requirements for Thermal Activation
4.2K
Thermal cycloadditions are reactions where the source of activation energy needed to initiate the reaction is provided in the form of heat. A typical example of a thermally-allowed cycloaddition is the Diels–Alder reaction, which is a [4 + 2] cycloaddition. In contrast, a [2 + 2] cycloaddition is thermally forbidden.
4.2K
Thermodynamic Potentials
1.5K
Thermodynamic potentials are state functions that are extremely useful in analyzing a thermodynamic system. They have dimensions of energy. The four important thermodynamic potentials are internal energy, enthalpy, Helmholtz free energy, and Gibbs free energy. These thermodynamic potentials can be expressed using two of the following variables: pressure, volume, temperature, and entropy. These two variables are expressed as the rate of change of the thermodynamic potential with respect to other...
1.5K
Thermodynamic Systems
7.5K
A thermodynamic system is a set of objects whose thermodynamic properties are of interest. The system is considered to be embedded in its surroundings or the environment. The system and its environment can exchange heat and do work on each other through a boundary that separates them. However, the immediate surroundings of the system interact with it directly and therefore have a much stronger influence on its behavior and properties.
Consider an example of tea boiling in a kettle. The...
Consider an example of tea boiling in a kettle. The...
7.5K
Regioselective Formation of Enolates
3.3K
As depicted in the figure below, the unsymmetrical ketones can form two possible enolates: less substituted or more substituted enolates. Usually, the thermodynamic enolates are formed from the more substituted α-carbon atom, while the kinetic enolates are formed faster by deprotonation from the less substituted position. The thermodynamic enolates have lower energy, so they are more stable. But the energy required to form kinetic enolates is less.
3.3K
Phase Transitions: Melting and Freezing
14.5K
Heating a crystalline solid increases the average energy of its atoms, molecules, or ions, and the solid gets hotter. At some point, the added energy becomes large enough to partially overcome the forces holding the molecules or ions of the solid in their fixed positions, and the solid begins the process of transitioning to the liquid state or melting. At this point, the temperature of the solid stops rising, despite the continual input of heat, and it remains constant until all of the solid is...
14.5K
Maxwell's Thermodynamic Relations
4.4K
Maxwell's thermodynamic relations are very useful in solving problems in thermodynamics. Each of Maxwell's relations relates a partial differential between quantities that can be hard to measure experimentally to a partial differential between quantities that can be easily measured. These relations are a set of equations derivable from the symmetry of the second derivatives and the thermodynamic potentials.
All thermodynamic potentials are exact differentials. Therefore, their second-order...
All thermodynamic potentials are exact differentials. Therefore, their second-order...
4.4K


