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Updated: Jan 13, 2026

Using SCOPE to Identify Potential Regulatory Motifs in Coregulated Genes

Using SCOPE to Identify Potential Regulatory Motifs in Coregulated Genes

Published on: May 31, 2011

非モデル植物におけるウェブベースのレギュラトリーモチーフ発見

Najla Ksouri¹, Ammar Abdalrahem¹, Francesc Montardit-Tarda¹

¹Estación Experimental de Aula Dei-CSIC, Zaragoza, Spain.

Methods in molecular biology (Clifton, N.J.)

|January 10, 2026

Abstract:

This protocol describes step-by-step how to discover and annotate DNA motifs in regulatory regions of clusters/modules of co-expressed genes in plants, including non-model species. It also explains how to control the significance of the results and how to associate the discovered motifs with potentially binding transcription factors (TFs). These tasks can all be done in a web browser. While it uses the plant-dedicated mirror of the Regulatory Sequence Analysis Tools (RSAT, http://plants.rsat.eu ), it can be used on any organism hosted at any RSAT mirror.

キーワード:

クラスター DNAモチーフ発見モジュール非モデル種植物ゲノム近接プロモーター

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mRNA Interactome Capture from Plant Protoplasts

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