オクラトキシンAと肝細胞がんを結びつける潜在的なメカニズムの解読:毒性学、機械学習、分子ドッキング、分子動力学シミュレーションを組み合わせた統合的アプローチ
Junyi Zhuo1, Hua Wu2, Xiaoling Zhou3
1Department of Gastroenterology, The People's Hospital of Leshan, Southwest Medical University, No. 639 Huian Road, Leshan, Sichuan, 614000, China.
Background:
Ochratoxin A (OTA), a common food-borne mycotoxin, is a potential human carcinogen, yet the specific molecular mechanisms linking it to hepatocellular carcinoma (HCC) remain unclear.
Methods:
We integrated network toxicology to predict OTA targets and intersected them with HCC transcriptomic data to identify key candidate genes. Functional enrichment analysis was then conducted. Multiple machine learning algorithms were applied to screen and validate core genes. Furthermore, molecular docking and molecular dynamics (MD) simulations were employed to evaluate the binding stability between OTA and key target proteins.
Results:
A total of 50 key genes were identified as potential targets for potential OTA-associated hepatocarcinogenesis. Enrichment analysis revealed their significant involvement in critical processes such as xenobiotic metabolism and oxidative stress response. Machine learning analysis prioritized eight core genes (AURKA, GABARAPL1, CA2, PARP1, LMNA, SLC27A5, EPHX2, and GSTP1), and a combined diagnostic model demonstrated outstanding performance (AUC = 0.986). Structural analyses via molecular docking and MD simulations confirmed stable binding interactions between OTA and these core targets.
Conclusions:
This integrated computational study identifies a set of candidate genes through which OTA may potentially interact with HCC-associated molecular networks. The robust binding predicted between OTA and the core targets provides a structural basis for these interactions. These findings offer a prioritized list of targets and a theoretical framework for subsequent experimental validation and investigation into OTA's toxicological role in HCC.
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関連する概念動画
Molecular Models
Molecular Orbital Theory I
Kinetic Molecular Theory: Molecular Velocities, Temperature, and Kinetic Energy
Molecular Orbital Theory II
Predicting Molecular Geometry
Molecular and Ionic Solids
Molecular Solids
Molecular crystalline solids, such as ice, sucrose (table sugar), and iodine, are solids that are composed of neutral molecules as their constituent units. These molecules are held together by weak intermolecular forces such as London dispersion forces, dipole-dipole interactions, or hydrogen bonds, which...
