作为基因组大小决定因素的DNA损失的证据
D A Petrov1, T A Sangster, J S Johnston
1Harvard University Society of Fellows, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA. dpetrov@oeb.harvard.edu
概括
在真核生物中,基因组大小的变化并不能由生物体的复杂性来解释. 这项研究发现,与Drosophila相比,Laupala的DNA损失较慢有助于它们的基因组更大.
科学领域:
- 进化生物学是进化的生物学.
- 基因组学就是基因组学.
背景情况:
- 细胞基因组大小差异很大 (超过五个数量级),这一现象被称为C值悖论.
- 这种变化并不能完全由生物复杂性的差异来解释.
研究的目的:
- 调查插入和删除 (indel) 突变模式在真核生物基因组大小变异中的作用.
- 为了测试不同的indel突变率是否解释了Laupala和Drosophila之间的大量基因组大小差异.
主要方法:
- 对印德尔突变谱的比较分析.
- 在Laupala和Drosophila中检查DNA损失率.
主要成果:
- 劳帕拉的基因组大小是Drosophila的11倍.
- 在Laupala中,DNA损失的速度比Drosophila慢40倍以上.
结论:
- 基因突变模式的差异,特别是较慢的DNA损失,可以显著促进真核生物物种之间基因组大小的变化.
- 这些发现支持这样一个假设:突变动态在塑造基因组进化过程中起着至关重要的作用.
相关概念视频
Overview of DNA Repair
In order to be passed through generations, genomic DNA must be undamaged and error-free. However, every day, DNA in a cell undergoes several thousand to a million damaging events by natural causes and external factors. Ionizing radiation such as UV rays, free radicals produced during cellular respiration, and hydrolytic damage from metabolic reactions can alter the structure of DNA. Damages caused include single-base alteration, base dimerization, chain breaks, and cross-linkage.
Chemically...
Chemically...
Base Excision Repair
One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...
The first step of...
Fixing Double-strand Breaks
The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...
Genome Copying Errors
DNA replication is a well-evolved process that copies millions of base pairs with high fidelity during each cell division. Occasionally a wrong base or a long stretch of wrong bases may get added to the daughter strands. If the errors are left unchecked, cells might accumulate several mutations that might endanger their survival. Therefore, the copying errors are checked and repaired at three levels.
Overview of DNA Repair
In order to be passed through generations, genomic DNA must be undamaged and error-free. However, every day, DNA in a cell undergoes several thousand to a million damaging events by natural causes and external factors. Ionizing radiation such as UV rays, free radicals produced during cellular respiration, and hydrolytic damage from metabolic reactions can alter the structure of DNA. Damages caused include single-base alteration, base dimerization, chain breaks, and cross-linkage.
Chemically...
Chemically...
Base Excision Repair
One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...
The first step of...


