在酵母中进行全球基因素乙化和脱乙化
1Department of Biological Chemistry, UCLA School of Medicine and the Molecular Biology Institute, University of California, Los Angeles 90095, USA.
Nature
|December 2, 2000
概括
包括乙化和脱乙化在内的基因组修饰在酵母基因组中广泛存在. 向基因调节发生在更广泛的全球基因素变化的背景下,影响基底转录.
科学领域:
- 分子生物学分子生物学
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 基因规则 基因规则
背景情况:
- 基因组乙转移酶 (HAT) 和脱乙酶 (HDAC) 通过修改基因组来调节基因表达.
- 特定的HATs (例如GCN5) 和HDACs (例如RPD3) 通过转录因子被招募到DNA中.
- PHO5基因的表达被核细胞抑制并由GCN5调节,但不是UME6.6.
研究的目的:
- 为了调查素乙化和脱乙化是否在PHO5基因中具有促剂特异性.
- 检查PHO5基因区域及其周围区域的乙化状态.
- 了解向和全球基因组修饰之间的相互作用.
主要方法:
- 染色体免疫沉 (ChIP) 试验.
- 针对乙化素残留物的抗体.
- 对围绕PHO5基因和其他染色体区域的4.25基基区域的分析.
主要成果:
- PHO5基因区域被ESA1和GCN5广泛乙化,并被HDA1和RPD3.3脱乙化.
- 在三个不同的染色体区域中观察到广泛的基因组修饰,总计22kb.
- 针对性基因素修饰发生在全球乙化和脱乙化背景下.
结论:
- 全球基因素乙化和脱乙化降低基底转录水平.
- 这种总体修改允许在消除向因子后快速恢复到初始的乙化状态.
- 基质子修饰是一个动态的过程,涉及有针对性的和全局的机制.
相关概念视频
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
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Spreading of Chromatin Modifications
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer is an enzyme that can...
Writers
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Histone Variants at the Centromere
Histone variants are the histone proteins with structural and sequence variations. These variants may be regarded as “mutant” forms that replace their canonical histone counterparts in the nucleosomes. Specific post-translational modifications on the histone variants enable further chromatin complexity and regulate tissue-specific gene expression. The most common histone variants are from histone H2A, H2B, and linker histone H1 families. However, several variants of histone H3 variants are also...
Heterochromatin
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at 9th...
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at 9th...
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Chromatin Modification in iPS Cells
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...


