在threonyl-tRNA合成酶中进行转移RNA中介编辑. 解决双重歧视问题的II类解决方案
A Dock-Bregeon1, R Sankaranarayanan, P Romby
1UPR 9004 Biologie Structurale IGBMC, CNRS/INSERM/ULP BP163 67404 Cedex, Illkirch, France.
Cell
|January 4, 2001
概括
氨基-tRNA合成酶通过在特定的N端部位的水解来编辑错误附着的血清. 这种编辑机制反映了其他合成酶类,突出显示了保留的tRNA结构切换,以提高准确性.
科学领域:
- 分子生物学分子生物学
- 酶学 是一种酶学.
- 结构生物学 结构生物学
背景情况:
- 氨基-tRNA合成酶 (ThrRS) 是一种II类合成酶,对蛋白质合成至关重要.
- 精确的tRNA氨基化非常重要,需要区分类似的氨基酸,如氨酸.
- 以前的研究表明,ThrRS使用独特的离子进行歧视.
研究的目的:
- 调查ThrRS与非同类氨基酸,特别是血清酸的歧视机制.
- 阐明N端域在错误充电tRNA的编辑中的作用.
- 为了比较I类和II类合成酶的编辑机制.
主要方法:
- 使用烯酸酸类似物对ThrRS的晶体结构分析.
- 生物化学试验用于研究氨基化和水解.
- 对tRNA编辑机制的比较分析.
主要成果:
- 晶体结构显示,在激活阶段,氨酸不能完全区分.
- 错误充电的ser-tRNA ((Thr) 的水解发生在ThrRS.N-终端域内的一个不同的位置.
- 这两种类型的合成酶都利用tRNA CCA末端的结构切换来进行氨基化和编辑.
结论:
- ThrRS使用一个特定的N端编辑部位来化错误充电的ser-tRNA.
- 建议I类和II类合成酶的编辑机制作为镜像,与tRNA结合和氨基酸激活一致.
- 保存的tRNA CCA末端形状灵活性支了跨合成酶类的准确氨基化和编辑.
相关概念视频
RNA Structure
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
Transfer RNA Synthesis
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Improving Translational Accuracy
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
Transcription Attenuation in Prokaryotes
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure. Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
RNA Structure
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
Transfer RNA Synthesis
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...


