异位性分子机械:脊椎动物的复杂性大大增加,由基因组比较揭示出来
L Aravind1, V M Dixit, E V Koonin
1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.
概括
人类基因组显示,与和线虫相比,apoptotic机械的复杂性增加了. 早期的亡进化可能涉及横向基因转移,由细菌中共享的蛋白质域证明.
科学领域:
- * 进化生物学 进化生物学
- * 分子生物学 * 分子生物学
- * 基因组学 是一个学科.
背景情况:
- * 人类基因组项目提供了几乎完整的人类基因组.
- *比较基因组学允许研究物种之间的进化关系.
- *细胞亡,或编程细胞死亡,是一种基本的生物过程.
研究的目的:
- * 为了在不同物种中比较apoptotic分子机制.
- * 调查亡的进化起源.
- * 为了识别apoptotic系统的共同和独特的组件.
主要方法:
- *对来自人类,和线虫基因组的蛋白质编码基因进行比较分析.
- * 检查蛋白质域架构.
- * 在细菌基因组中生物信息识别apoptotic蛋白域.
主要成果:
- * 脊椎动物的亡机器比和线虫要复杂得多.
- *人类和之间共享的亡成分,但不是线虫,表明一个体类.
- * 在Actinomycetes和菌中发现的广泛的亡蛋白域表明横向的基因转移.
结论:
- * 脊椎动物的亡进化增加了复杂性.
- * 亡的进化史涉及垂直遗传和水平基因转移.
- *比较基因组学对于理解复杂生物过程的演变至关重要.
相关概念视频
Protein Complexes with Interchangeable Parts
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
Evolutionary Relationships through Genome Comparisons
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
Multi-species Conserved Sequences
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Gene Duplication and Divergence
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
Exon Recombination
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Types of Genetic Transfer Between Organisms
Genetic transfer occurs when genetic information is passed from one organism to another. It occurs via two mechanisms: vertical gene transfer and horizontal gene transfer. Vertical gene transfer occurs when genetic information is transferred from one generation to the next, which happens much more frequently than horizontal gene transfer. Both sexual and asexual reproduction are forms of vertical gene transfer, where one or more organisms pass some or all of their genome onto their progeny.


