一个具有单链DNA分子的IA型DNA拓酶复合体的晶体结构
A Changela1, R J DiGate, A Mondragón
1Department of Biochemistry, Molecular Biology and Cell Biology, Northwestern University, Evanston, Illinois 60208, USA.
Nature
|June 29, 2001
概括
研究人员确定了与ssDNA复合的不活跃DNA拓酶III突变体的晶体结构. 这揭示了酶如何改变形状来结合DNA,为DNA拓调节提供了洞察力.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 结构生物学 结构生物学
背景情况:
- 像DNA复制和转录这样的细胞过程依赖于管理DNA拓的酶.
- DNA拓酶是关键的酶,通过分裂和重新连接DNA链来改变DNA拓.
研究的目的:
- 阐明来自大肠杆菌的一种IA型酶 - - 埃舍里希亚大肠杆菌的DNA拓酶III的结构机制.
- 了解这种酶如何与单链DNA (ssDNA) 在分子水平上相互作用.
主要方法:
- 使用X射线晶体学来确定大肠杆菌DNA毒性酶III的非活性突变体的结构.
- 该结构以2.05 Å分辨率在一个非共价复合体中与一个8个基的ssDNA分子中得到分辨.
主要成果:
- 晶体结构显示了酶的形状变化,允许ssDNA在通向活性部位的槽内结合.
- 结合的ssDNA采用一种类似于B-DNA的形状.
- 在重新调整的活性位点中DNA的定位突出了保存残留在催化中的作用.
结论:
- 这些发现提供了对IA型DNA topoisomerases机制的结构洞察.
- 这项研究表明,它对其他拓酶和DNA重组蛋白具有功能意义.
相关概念视频
Viral Structure
Viruses are extraordinarily diverse in shape and size, but they all have several structural features in common. All viruses have a core that contains a DNA- or RNA-based genome. The core is surrounded by a protective coat of proteins called the capsid. The capsid is composed of subunits called capsomeres. The capsid and genome-containing core are together known as the nucleocapsid.
DNA Helicases
DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
DNA Topoisomerases
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. Type I...
Types and Mechanism of action
Topoisomerases are divided into two main types. Type I...
Single-Strand DNA Binding Proteins
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
Nucleic Acid Structure
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA has a double-helix structure. The...
DNA Structure
DNA has a double-helix structure. The...
DNA Bacteriophages
Bacteriophages, or phages, are viruses that specifically infect bacteria, utilizing their genetic material to hijack host cellular machinery for replication. DNA bacteriophages employ single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) genomes. These phages exhibit diverse replication strategies and host interactions, influencing their ecological roles and applications in biotechnology and medicine.ssDNA BacteriophagesssDNA phages, with their small genomes, utilize unique strategies to...


