溶解,间隔的多氨酸:用于确定氨基酸α螺旋倾向的无上下文系统
Justin S Miller1, Robert J Kennedy, Daniel S Kemp
1Department of Chemistry, Room 18-582, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Journal of the American Chemical Society
|February 7, 2002
概括
研究人员设计出具有可预测螺旋性质的水溶性聚氨酸. 他们的研究揭示了对氨酸螺旋倾向的新见解,并改进了用于结构预测的现有建模参数.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 聚合物科学 聚合物科学
背景情况:
- 设计具有可预测结构的质对于应用至关重要.
- 聚氨酸是研究蛋白质二次结构的基本模型.
- 了解影响螺旋体形成的因素对于新的蛋白质设计至关重要.
研究的目的:
- 介绍水溶解,间隔的多氨酸的逻辑设计原则.
- 为了研究聚氨酸长度和螺旋性质之间的关系.
- 开发改进的数学模型来预测螺旋性.
主要方法:
- 循环二重化 (CD) 光谱法用于测量螺旋性质 ([theta](222)).
- 合成和分析了具有不同氨酸核心长度 (12-45个残留物) 的.
- 数据被用来计算氨酸螺旋倾向 (w(Ala)) 并完善现有模型.
主要成果:
- 设计的聚氨酸没有聚合,并表现出长度依赖的螺旋性质.
- 氨酸核的CD贡献独立于其他特征.
- 确定了氨酸的新螺旋倾向值,挑战了现有的参数.
结论:
- 该研究为设计具有可控螺旋性的可溶性聚氨提供了一个框架.
- 目前的螺旋性建模参数不足以准确预测结构.
- 一个经过修改的Lifson-Roig算法结合了结合作性,提供了更好的建模精度.
更多相关视频
相关概念视频
Factors Affecting Solubility
Compared with pure water, the solubility of an ionic compound is less in aqueous solutions containing a common ion (one also produced by dissolution of the ionic compound). This is an example of a phenomenon known as the common ion effect, which is a consequence of the law of mass action that may be explained using Le Chȃtelier’s principle. Consider the dissolution of silver iodide:
Acid Halides to Amides: Aminolysis
Aminolysis is a nucleophilic acyl substitution reaction, where ammonia or amines act as nucleophiles to give the substitution product. Acid halides react with ammonia, primary amines, and secondary amines to yield primary, secondary, and tertiary amides, respectively.
In the first step of the aminolysis mechanism, the amine attacks the carbonyl carbon of the acyl chloride to form a tetrahedral intermediate. In the second step, the carbonyl group is re-formed with the elimination of a chloride...
In the first step of the aminolysis mechanism, the amine attacks the carbonyl carbon of the acyl chloride to form a tetrahedral intermediate. In the second step, the carbonyl group is re-formed with the elimination of a chloride...
Colloidal precipitates
The high insolubility of some precipitates can result in an unfavorable relative supersaturation. This can lead to colloidal particles with a large surface-to-mass ratio, where adsorption is promoted. For instance, in the precipitation of silver chloride, silver ions are adsorbed on the surface of the colloidal particles, forming a primary layer. This layer attracts ions of opposite charge (such as nitrate ions), forming a diffuse secondary layer of adsorbed ions. This electric double layer...
Extraction: Effects of pH
Consider a neutral form of an amine, B, with a partition coefficient, K, in a liquid mixture containing organic and aqueous phases. The pH of the aqueous phase affects the charge on acidic and basic solutes, and the charged form is usually more soluble in the aqueous phase. Suppose the conjugate acid form of the amine is soluble only in the aqueous phase while the base form is soluble in both phases. Then the distribution coefficient, D, can be given as the ratio of amine concentration in the...
Ion Exchange
Ion exchange chromatography separates charged molecules from a solution by reversibly exchanging them with mobile, or 'active', ions associated with the oppositely charged stationary phase. This method can be used to separate ions, soften and deionize water, and purify solutions. The polymers comprising the ion-exchange column are high-molecular-weight and chemically stable polymers, crosslinked to be porous and essentially insoluble. They are also functionalized with either acidic or basic...
Factors Affecting Dissolution: Polymorphism, Amorphism and Pseudopolymorphism
Polymorphism refers to the existence of a drug substance in multiple crystalline forms, known as polymorphs. Recently, this term has been expanded to include solvates (forms containing a solvent), amorphous forms (non-crystalline forms), and desolvated solvates (forms from which the solvent has been removed).
Some polymorphic crystals possess lower aqueous solubility than their amorphous counterparts, leading to incomplete absorption. For instance, the oral suspension of Chloramphenicol, which...
Some polymorphic crystals possess lower aqueous solubility than their amorphous counterparts, leading to incomplete absorption. For instance, the oral suspension of Chloramphenicol, which...


