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相关概念视频

Electron Orbital Model01:18

Electron Orbital Model

Orbitals are the areas outside of the atomic nucleus where electrons are most likely to reside. They are characterized by different energy levels, shapes, and three-dimensional orientations. The location of electrons is described most generally by a shell or principal energy level, then by a subshell within each shell, and finally, by individual orbitals found within the subshells.The first shell is closest to the nucleus, and it has only one subshell with a single spherical orbital called the...
Intermolecular Forces03:13

Intermolecular Forces

Atoms and molecules interact through bonds (or forces): intramolecular and intermolecular. The forces are electrostatic as they arise from interactions (attractive or repulsive) between charged species (permanent, partial, or temporary charges) and exist with varying strengths between ions, polar, nonpolar, and neutral molecules. The different types of intermolecular forces are ion–dipole, dipole–dipole, hydrogen bonds, and dispersion; among these, dipole–dipole, hydrogen bonds, and dispersion...
Atomic Nuclei: Nuclear Magnetic Moment00:59

Atomic Nuclei: Nuclear Magnetic Moment

All atomic nuclei are positively charged. When they have a nonzero spin, they behave like rotating charges. As a consequence of their charge and spin, these nuclei generate a magnetic field (B). This, in turn, gives rise to a magnetic moment (μ), which is randomly oriented in the absence of an external magnetic field. When an external magnetic field (B0) is applied, the magnetic moment vectors can align with the field or against it in 2 + 1 orientations. A hydrogen nucleus, which is just a...
Atomic Nuclei: Larmor Precession Frequency01:11

Atomic Nuclei: Larmor Precession Frequency

The earth's gravitational field produces a 'twisting force' perpendicular to the angular momentum of a spinning mass (such as a spinning top) that causes the mass to 'wobble' around the gravitational field axis in a phenomenon called precession. Similarly, the magnetic moment (μ) of a spinning nucleus precesses due to an external magnetic field directed along the z-axis. The precession of the magnetic moment vector about the magnetic field is called Larmor precession, and the angular frequency...
Atomic Nuclei: Nuclear Relaxation Processes01:23

Atomic Nuclei: Nuclear Relaxation Processes

In the absence of an external magnetic field, nuclear spin states are degenerate and randomly oriented. When a magnetic field is applied, the spins begin to precess and orient themselves along (lower energy) or against (higher energy) the direction of the field. At equilibrium, a slight excess population of spins exists in the lower energy state. Because the direction of the magnetic field is fixed as the z-axis,  the precessing magnetic moments are randomly oriented around the z-axis. This...
π Electron Effects on Chemical Shift: Aromatic and Antiaromatic Compounds01:14

π Electron Effects on Chemical Shift: Aromatic and Antiaromatic Compounds

In aromatic compounds, such as benzene, the circulation of (4n + 2) π-electrons sets up a diamagnetic or diatropic ring current around the perimeter of the molecule. This current induces a magnetic field that opposes the external field inside the ring and reinforces it on the outside. The protons in benzene are deshielded and exhibit high chemical shifts in the range 6.5–8.5 ppm. The shielding effect at the center of the ring is evident in complex aromatic molecules, such as annulenes. In...

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相关实验视频

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Contrast-Matching Detergent in Small-Angle Neutron Scattering Experiments for Membrane Protein Structural Analysis and Ab Initio Modeling
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Contrast-Matching Detergent in Small-Angle Neutron Scattering Experiments for Membrane Protein Structural Analysis and Ab Initio Modeling

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在模型阿尔法螺旋中的阴离子-皮相互作用.

Zhengshuang Shi1, C Anders Olson, Neville R Kallenbach

  • 1Department of Chemistry, New York University, New York 10003, USA.

Journal of the American Chemical Society
|March 28, 2002
PubMed
概括

涉及氨酸和氨酸的子-pi相互作用在正确定向时显著提高了螺旋的稳定性. 这种相互作用比 fenylalanine-arginine 更强烈,为蛋白质稳定提供了洞察力.

科学领域:

  • 生物化学 生物化学
  • 化学物理 化学物理
  • 分子生物学分子生物学

背景情况:

  • 在生物和化学系统中,-相互作用至关重要.
  • 了解这些相互作用有助于预测蛋白质结构和稳定性.

研究的目的:

  • 为了研究阴离子-pi相互作用对螺旋性的影响.
  • 量化特定残留配对 (Trp/Arg,Phe/Arg) 对螺旋稳定性的能量贡献.

主要方法:

  • 循环二元化 (CD) 光谱法来评估的螺旋性.
  • 核磁共振 (NMR) 谱学用于分析分子相互作用.
  • 实验确定自由能量对螺旋体稳定性的贡献.

主要成果:

  • A Trp-->Arg (i,i + 4) 相互作用为螺旋稳定提供了 -0.4 kcal/mol的有利的自由能量贡献.
  • 反向的Arg->Trp (i,i + 4) 方向没有显著的自由能量增益.
  • 氨酸和氨酸的相互作用比氨酸和氨酸的相互作用更强.
  • 阴离子-皮相互作用对盐查的敏感性很小.

结论:

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  • 残留物的方向和间距对于中有利的阴离子-pi相互作用至关重要.
  • 氨酸-氨酸-pi相互作用对螺旋体的稳定性有显著的贡献,比氨酸-氨酸更为如此.
  • 实验发现与有关Trp与Phe在cation-pi相互作用的相对强度的理论预测一致,尽管大小不同.