精卵碳一氧化肌球蛋白中的血扭曲:在MD产生的结构中的旋转强度和血扭曲之间的相关性
Christoph Kiefl1, Narasimha Sreerama, Raid Haddad
1Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, CO 80523, USA.
Journal of the American Chemical Society
|March 28, 2002
概括
在精液中研究血红细胞旋转异构体的碳monoxymyoglobin揭示了蛋白质矩阵影响血红细胞构成. 计算模拟表明,结合部位偏好特定的宏循环结构,而不考虑血红细胞的方向.
科学领域:
- 生物物理学的生物物理.
- 计算化学计算化学
- 结构生物学 结构生物学
背景情况:
- 骨质红蛋白中的血液旋转异构体会影响蛋白质的功能.
- 了解这些同位素对于蛋白质动力学研究至关重要.
研究的目的:
- 为了研究黄体旋转异构体在鱼碳monoxymyoglobin中的影响.
- 分析海姆扭曲及其与旋转强度的相关性.
主要方法:
- 计算技术,包括分子动力学模拟.
- 使用中子衍射和NMR结构作为起点.
- 正常坐标结构分解用于海姆扭曲分析.
主要成果:
- 在模拟中,来自中子衍射结构的血质扭曲得到了保留.
- 基于NMR的模拟显示了血红蛋白扭曲的偏差.
- 蛋白质矩阵在两个血红素异构体 (A和B) 上引起了类似的扭曲.
结论:
- 肌球蛋白结合部位表现出一种偏好特定的宏循环形状.
- 血质的方向 (180度旋转) 并没有显著改变蛋白质的结构偏好.
- 内在的旋转强度与海姆和pyrrole环扭曲相关.
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